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Report for CCDS23510.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23510.1 Public Mus musculus 9 Actl11 23 108 98 CCDS HistoryNCBI Gene:67722Re-query CCDS DB by CCDS ID:23510.1Re-query CCDS DB by GeneID:67722See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23510.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085073.1 ENSMUSP00000082150.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085073.1Link to Ensembl Protein Viewer:ENSMUSP00000082150.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000085073Re-query CCDS DB by Protein ID:ENSMUSP00000082150
Original member Current member NCBI NM_026338.3 NP_080614.1 Accepted alive Link to Nucleotide Sequence:NM_026338.3Link to Protein Sequence:NP_080614.1Re-query CCDS DB by Nucleotide ID:NM_026338Re-query CCDS DB by Protein ID:NP_080614Link to BLAST:NP_080614.1

Chromosomal Locations for CCDS 23510.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 107928480 107932103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3624 nt):
ATGGAAGACACCAAGAAGGTGGGGGGCCCTGATCCATCGGGCCCCCAGGGCCATCCACTGCCTAGCAGCC
AGCAGCTAACGGGTGGCTTCAAAGTGTCCCAGGGACCATGGATGAACCCTAAATCCCTCTACTCGAAGCA
AGGGCTGTCACTCTCCACCGGGGCCATCAACTCAACCTCTCAGGCTCCTGCCTCTCAACCCATGCTTCAA
CTACTCCATAATTCTGCTCAGGTCAACTCCCAGTGTGACTATGCACGGGCCTCCCAGGACACCTCGAGAT
TCTCTTCTAACCCATACCCAAACCCCGTTGTGGGAACCCAGGAGCATCTCCTCATGGATGATGGGACTCA
GACTCTGCCAATGCCCCCAGACAACAACGGCACAGATGACAAAGCCCAGTACAGATTCAACCTCTCCCAG
AATCAGTTACAGATTGGGAGGGAGAGCAAGGCTCCAGCTAAAGTCCTGGTAGGCTGGGGCAAAGGAACCT
GTAACATTGGCCAGATGGCCTCTGAGGGCTCCAGAAAGAGTCGATGGCTACCCTACTTCCTCTCGGGAGA
GAGTGGTGTAGTTGAAGGTCAAGCACCTCTTCTGACTCAGGCTCCAGTCCAAGATCAGAGGCAAGACAAG
TGTCCATGTCTGGCTCAGTCTCCCACCCTAAACAAGGCGACTTCTTCACCGTCACTGCCTCTTCCAACCT
CAGTGCCAGCTTCTGTCGCAGCTGTCAACGGATTACCAGCACCTGCCGCAGTTAAACCTTACACCTATAG
TCCCAACTACCTGACTAATACCACTGCAGCCGCTAAAGACCTGCCTCTTGATCTAAGGAACGGGGGCAAC
CAATTGTCTGTTCTCTCAGATCCTTCCAAAAAGGACAAAGTATATTTTTTCCTTAAGGAGACTCCTCCCA
CTCCAACATCTAGTCCAGCAGAATTTTCACCCAAAATCCAGGACCAAGAAGTTGCCAAGGTGCAGGTGCC
AATCCAGCAATCTGAGTACCCTGCAAAGAAGTGTCTAGTCTCCAGGCTAGACACCTTAACATCAACCTCA
GAGCCTCTAGACTCTTTCAAGATACAGGAGAATAGCCACAAGGTTTGCAGCTCTCATCCAGACAAGCAGC
CCCCCAATGCCTGCAACAACAACAACTGCTCTAACGTGCCACTGCCGGTCCTACAAGGAGCCTACAGCAA
GCATTCCCTTCCCCAGTCTCCCAGAGGAGTCATACAGAGTCCCATTTCTGGCGCCCCAACCTGCCAGCTC
CAGGATGCTGTAGAAGACCATGTGCTGGTATTTGATATGGCCACAGGCAATACAAGGATGGGGTTGTTGT
GCCATGATCCCATGGGCTCACGGGCAGTGCTTGTAGGTCTCACACCCAGCCACCCATCAAATCATGTTTC
TGATAATACGCTGTCTGCTTGGTCATTATCCAGGCCAATTCTCTCCCCTAACAGTGATCACCCCAGCCTC
TGGTCTACCACAGCCGTGCTGTCTAGCCCTGTACCCTCCAGTCTCTCAGCTGGAAGCTACCGAGAGGTAG
CCCTGGTTTCCAAGGAGGCCAAACATAATCTAGAGCCACGGACTTCCCCTGGCACCGAAAGCCCTATCAG
AATGCTTGCCAGACCTGTTGTACCGGGGACACCCATCCAATATGGTGAAAAGATATCAGCCCAAGTTCCT
GATCCTAGCTGGCCCAAATCTGATGCTGAAAAGATGGGCACCGACCACACTATCTGGAAGCTGGACAGTC
CCACGGTCCAGCCTAGGAAGTTGCAGTGGATAAAGCCAGATCCTGTTTCAACAGTCGATATCCAGGTAGT
GTCCAGATCGCCACTCCAGGAGAAAGCAGGCAGCACTAACCAGCAAGCAGCTCACCCTAGTGTTCCTCAG
GCTGAAGGTACTGGACAAGTCTTCCTCACTGGACAGAGTTTCCTCAATGGGCAGAACCTCCTGGCTAGAC
AACCACCTGTAGCTGAGCAGGGCTCCCTATCTGGTCAGCTTCCCTCTACCAAGCAACTCCCACTTACCTG
TGCGCCTCATCTCAATGAACAGACTCCTCTTCCCAGACAACTTTCCCTCACTAGACATGTGCCCGTCCCA
GTGAAGCCTCCCACCACCAAAGAGCCCCCCTTCACCTCTGGGGAGCCCATCCAGCCTCAAGAGAATGAAC
CTTTGTGCAATGCTACACATGTGGGAATACTCAGAGTACCCCTGACTCCTGAGGGGACCTGTCTTTACGT
GAATAGAGATAAAGTTGAAAACAATAGGGTTCAAAGGTCCAGCATAAATCAGCCCCAGTCCTGGCAACCT
AGCAATCCCCATAGGGCCCAGCAGGAACAACTTTCTTTGATCACGTTTACTGGTTGTAAGGATTTGCCCA
TATCCATGGTGGCCACTGAGTCCACAAATGGACACCAGTTCAAGATGACCTCTGAGGACATTACACACGC
ATCAGTGGTTGCTCACCTGGGCCTTCTCCGCGGGAACTGCTATGAGTTAGTATCCACTGTGGACACTGTA
CCAGTGCAATCAGCTGTGCTCTGTAACCGCTCCTCCAGCCCCTACCAGAAAATGGCGGCCATCGTGATAG
ATACTGGCACAGGATTTACCAAATGTGGACTGGCCCAAGAGAACCATGTCCTCAGTGTGGTACCCTCACA
AGTCCAGATGCTGCAACACCCACCCCAGGGCCAGCCCCAATATGTGGTACCCGAACACCAAGAGGGCTCC
TACTCAGTACTGAACCGAGGAGTAGTCTCTGACTGGGACGCTCTAGAGGTGCTGTGGCAACACCTGTTCT
ACTGTAAACTGAAAGTGCAGCCTGAGGAGATGGCCGTGCTTGTGGCTGACTCCCCCATCTCACCACGAAC
CAACAGAGAGAAGGTGGCCGAAATACTCTTTGAGCGTTTCCATGTGCCAGCTATGCAGACAGTTCATCAG
GCTCTGTTAACGCTCTATGCTTATGGGCGCACCACTGGGCTGGTTGTGGGAAGCGGCCATGGGACCTCCT
ACGTGGCACCCATCATCACTGGGGACCTGGCTCCAATTGACACCTACCGGCTGGATGTGGCTGGTGCTGA
CCTCACTGATTACCTGACTCAGCTACTCTTGTCTGGTGGCCACTCGCTACCCAAGGGAGGGATCATCAGA
CAGATTAAAGAGGCCTGCTGTTACGTGGCTATGGATACAGCAACTGAGATGGCCCGGAACCAGTCCCAGG
TTCAGGTGGACTTTGTGCTCCCAGATAAGCATGTTATCACACTGGGCTCCGAGCGCTTCTGTTGCCCCGA
GGCTCTCTTTCAACCCAATCTGCTAGGTCTCAACCAGCTAGGCCTTCCACAGCTGGCCCTGCTAAGCATC
AATCGGTTGGAGGTCAAGCAGCAGGAGCAGTTGCTGGCCAATGTGGTGCTGGAAGGTGGTAGCACCCTGA
TAAATGGTTTCCCTGAGCGCATGAGACAGGAGCTGGGTCCTGGTGCCACTGTGCTGGGTTCTCCCCACCG
TGCAGTTGCTGCCTGGCTTGGGGGTTCCATCATGGCATGCCGGGACTCCTTCCAAAGCCTGTGGCTCACT
CGCAGGGAATATGAAGAGGAAGGCCCGTGGGCTGTCTACAAATATCAGCTGTGA

Translation (1207 aa):
MEDTKKVGGPDPSGPQGHPLPSSQQLTGGFKVSQGPWMNPKSLYSKQGLSLSTGAINSTSQAPASQPMLQ
LLHNSAQVNSQCDYARASQDTSRFSSNPYPNPVVGTQEHLLMDDGTQTLPMPPDNNGTDDKAQYRFNLSQ
NQLQIGRESKAPAKVLVGWGKGTCNIGQMASEGSRKSRWLPYFLSGESGVVEGQAPLLTQAPVQDQRQDK
CPCLAQSPTLNKATSSPSLPLPTSVPASVAAVNGLPAPAAVKPYTYSPNYLTNTTAAAKDLPLDLRNGGN
QLSVLSDPSKKDKVYFFLKETPPTPTSSPAEFSPKIQDQEVAKVQVPIQQSEYPAKKCLVSRLDTLTSTS
EPLDSFKIQENSHKVCSSHPDKQPPNACNNNNCSNVPLPVLQGAYSKHSLPQSPRGVIQSPISGAPTCQL
QDAVEDHVLVFDMATGNTRMGLLCHDPMGSRAVLVGLTPSHPSNHVSDNTLSAWSLSRPILSPNSDHPSL
WSTTAVLSSPVPSSLSAGSYREVALVSKEAKHNLEPRTSPGTESPIRMLARPVVPGTPIQYGEKISAQVP
DPSWPKSDAEKMGTDHTIWKLDSPTVQPRKLQWIKPDPVSTVDIQVVSRSPLQEKAGSTNQQAAHPSVPQ
AEGTGQVFLTGQSFLNGQNLLARQPPVAEQGSLSGQLPSTKQLPLTCAPHLNEQTPLPRQLSLTRHVPVP
VKPPTTKEPPFTSGEPIQPQENEPLCNATHVGILRVPLTPEGTCLYVNRDKVENNRVQRSSINQPQSWQP
SNPHRAQQEQLSLITFTGCKDLPISMVATESTNGHQFKMTSEDITHASVVAHLGLLRGNCYELVSTVDTV
PVQSAVLCNRSSSPYQKMAAIVIDTGTGFTKCGLAQENHVLSVVPSQVQMLQHPPQGQPQYVVPEHQEGS
YSVLNRGVVSDWDALEVLWQHLFYCKLKVQPEEMAVLVADSPISPRTNREKVAEILFERFHVPAMQTVHQ
ALLTLYAYGRTTGLVVGSGHGTSYVAPIITGDLAPIDTYRLDVAGADLTDYLTQLLLSGGHSLPKGGIIR
QIKEACCYVAMDTATEMARNQSQVQVDFVLPDKHVITLGSERFCCPEALFQPNLLGLNQLGLPQLALLSI
NRLEVKQQEQLLANVVLEGGSTLINGFPERMRQELGPGATVLGSPHRAVAAWLGGSIMACRDSFQSLWLT
RREYEEEGPWAVYKYQL


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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