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Report for CCDS23916.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23916.1 Public Mus musculus 10 Tfam 23 108 98 CCDS HistoryNCBI Gene:21780Re-query CCDS DB by CCDS ID:23916.1Re-query CCDS DB by GeneID:21780See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23916.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092430.10 ENSMUSP00000090086.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092430.10Link to Ensembl Protein Viewer:ENSMUSP00000090086.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000092430Re-query CCDS DB by Protein ID:ENSMUSP00000090086
Original member Current member NCBI NM_009360.4 NP_033386.1 Accepted alive Link to Nucleotide Sequence:NM_009360.4Link to Protein Sequence:NP_033386.1Re-query CCDS DB by Nucleotide ID:NM_009360Re-query CCDS DB by Protein ID:NP_033386Link to BLAST:NP_033386.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033386.1 243 P40630-1 243 100% 0 0

Chromosomal Locations for CCDS 23916.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 71228559 71228699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 71229087 71229143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 71233357 71233452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 71234865 71235014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 71235543 71235613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 71236916 71237031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 71237840 71237940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (732 nt):
ATGGCGCTGTTCCGGGGAATGTGGAGCGTGCTAAAAGCACTGGGGCGCACGGGGGTCGAGATGTGCGCGG
GCTGCGGGGGTCGCATCCCCTCGTCTATCAGTCTTGTCTGTATTCCGAAGTGTTTTTCCAGCATGGGTAG
CTATCCAAAGAAACCTATGAGTTCATACCTTCGATTTTCCACAGAACAGCTACCCAAATTTAAAGCTAAA
CACCCAGATGCAAAACTTTCAGAATTGGTTAGGAAAATTGCAGCCCTGTGGAGGGAGCTACCAGAAGCAG
AAAAAAAGGTTTATGAAGCTGATTTTAAAGCTGAGTGGAAAGCATACAAAGAAGCTGTGAGCAAGTATAA
AGAGCAGCTAACTCCAAGTCAGCTGATGGGTATGGAGAAGGAGGCCCGGCAGAGACGGTTAAAAAAGAAA
GCACTGGTAAAGAGAAGAGAATTAATTTTGCTTGGAAAACCAAAAAGACCTCGTTCAGCATATAACATTT
ATGTATCTGAAAGCTTCCAGGAGGCAAAGGATGATTCGGCTCAGGGAAAATTGAAGCTTGTAAATGAGGC
TTGGAAAAATCTGTCTCCTGAGGAAAAGCAGGCATATATTCAGCTTGCTAAAGATGATAGGATTCGTTAC
GACAATGAAATGAAGTCTTGGGAAGAGCAGATGGCTGAAGTTGGACGAAGTGATCTCATCCGTCGAAGTG
TGAAACGATCCGGAGACATCTCTGAGCATTAA

Translation (243 aa):
MALFRGMWSVLKALGRTGVEMCAGCGGRIPSSISLVCIPKCFSSMGSYPKKPMSSYLRFSTEQLPKFKAK
HPDAKLSELVRKIAALWRELPEAEKKVYEADFKAEWKAYKEAVSKYKEQLTPSQLMGMEKEARQRRLKKK
ALVKRRELILLGKPKRPRSAYNIYVSESFQEAKDDSAQGKLKLVNEAWKNLSPEEKQAYIQLAKDDRIRY
DNEMKSWEEQMAEVGRSDLIRRSVKRSGDISEH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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