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Report for CCDS24298.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24298.1 Public Mus musculus 10 Rdh5 23 108 98 CCDS HistoryNCBI Gene:19682Re-query CCDS DB by CCDS ID:24298.1Re-query CCDS DB by GeneID:19682See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24298.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026406.13 ENSMUSP00000026406.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026406.13Link to Ensembl Protein Viewer:ENSMUSP00000026406.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000026406Re-query CCDS DB by Protein ID:ENSMUSP00000026406
Original member NCBI NM_001358527.1 NP_001345456.1 Updated not alive Link to Nucleotide Sequence:NM_001358527.1Link to Protein Sequence:NP_001345456.1Re-query CCDS DB by Nucleotide ID:NM_001358527Re-query CCDS DB by Protein ID:NP_001345456
Current member NCBI NM_001358527.2 NP_001345456.1 Accepted alive Link to Nucleotide Sequence:NM_001358527.2Link to Protein Sequence:NP_001345456.1Re-query CCDS DB by Nucleotide ID:NM_001358527Re-query CCDS DB by Protein ID:NP_001345456Link to BLAST:NP_001345456.1
Original member NCBI NM_134006.5 NP_598767.1 Updated not alive Link to Nucleotide Sequence:NM_134006.5Link to Protein Sequence:NP_598767.1Re-query CCDS DB by Nucleotide ID:NM_134006Re-query CCDS DB by Protein ID:NP_598767
Current member NCBI NM_134006.6 NP_598767.1 Accepted alive Link to Nucleotide Sequence:NM_134006.6Link to Protein Sequence:NP_598767.1Re-query CCDS DB by Nucleotide ID:NM_134006Re-query CCDS DB by Protein ID:NP_598767Link to BLAST:NP_598767.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345456.1 318 O55240 318 100% 0 0
NP_598767.1 318 O55240 318 100% 0 0

Chromosomal Locations for CCDS 24298.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 128913713 128913936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128914135 128914298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128917880 128918138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128918253 128918562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGTGGCTGCCTCTGCTTCTGGGTGCCTTGCTGTGGGCAGTGCTGTGGTTGCTCAGAGACCGGCAGAGCC
TGCCGGCCAGTGATGCTTTCATCTTCATCACTGGCTGTGACTCTGGCTTTGGGCGCCTTCTGGCACTGCA
ACTTGACCAGAAGGGCTTCCAAGTCCTGGCCGGCTGCCTGACCCCCTCTGGAGCAGAAGACCTGCAGCAG
ATGGCCTCCTCCCGCCTCCACACAACACTACTGGATATCACTGATCCCCAGAATGTCCAGCAAGTTGCCA
AGTGGGTGAAGACACGTGTTGGAGAAACTGGACTTTTTGGTCTGGTGAATAACGCTGGCGTAGCTGGTAT
CATCGGGCCCACACCATGGCTAACACAGGATGATTTCCAGAGAGTACTGAGTGTGAACACACTGGGGCCC
ATCGGTGTCACCCTTGCCCTGCTGCCCCTGCTACAGCAGGCCAGGGGTCGGGTGGTCAACATCACCAGTG
TCTTGGGCCGCATAGCAGCCAATGGCGGGGGCTACTGTGTCTCCAAGTTTGGCCTGGAGGCCTTCTCTGA
CAGCCTGAGGCGGGACATGGCTCCGTTCGGAGTACAAGTCTCCATTGTGGAGCCTGGCTTCTTTCGAACC
CCTGTGACCAACCTGGAGAGTCTGGAGAGCACCCTGAAGGCTTGTTGGGCCCGGCTACCTCCAGCTATAC
AGGCCCACTACGGGGAAGCCTTCCTCGATACTTATCTTCGAGTACAGCGCCGCATCATGAACCTGATCTG
TGACCCAGAACTAACGAAGGTGACCAGCTGCCTGGAGCATGCCCTGACTGCTCGCCACCCCCGAACACGC
TACAGCCCAGGCTGGGATGCCAAGCTGCTCTGGCTGCCTGCCTCCTACCTTCCAGCCAGGGTGGTGGATG
CTGTGCTCACCTGGATCCTTCCCCGGCCCGCCCAGTCAGTCTCCTGA

Translation (318 aa):
MWLPLLLGALLWAVLWLLRDRQSLPASDAFIFITGCDSGFGRLLALQLDQKGFQVLAGCLTPSGAEDLQQ
MASSRLHTTLLDITDPQNVQQVAKWVKTRVGETGLFGLVNNAGVAGIIGPTPWLTQDDFQRVLSVNTLGP
IGVTLALLPLLQQARGRVVNITSVLGRIAANGGGYCVSKFGLEAFSDSLRRDMAPFGVQVSIVEPGFFRT
PVTNLESLESTLKACWARLPPAIQAHYGEAFLDTYLRVQRRIMNLICDPELTKVTSCLEHALTARHPRTR
YSPGWDAKLLWLPASYLPARVVDAVLTWILPRPAQSVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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