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Report for CCDS24322.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24322.1 Public Mus musculus 10 Or6c66b 23 108 98 CCDS HistoryNCBI Gene:258150Re-query CCDS DB by CCDS ID:24322.1Re-query CCDS DB by GeneID:258150See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24322.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076575.3 ENSMUSP00000096707.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076575.3Link to Ensembl Protein Viewer:ENSMUSP00000096707.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000076575Re-query CCDS DB by Protein ID:ENSMUSP00000096707
Original member Current member EBI ENSMUST00000215436.1 ENSMUSP00000149872.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215436.1Link to Ensembl Protein Viewer:ENSMUSP00000149872.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215436Re-query CCDS DB by Protein ID:ENSMUSP00000149872
Original member Current member NCBI NM_001011849.1 NP_001011849.1 Accepted alive Link to Nucleotide Sequence:NM_001011849.1Link to Protein Sequence:NP_001011849.1Re-query CCDS DB by Nucleotide ID:NM_001011849Re-query CCDS DB by Protein ID:NP_001011849Link to BLAST:NP_001011849.1

Chromosomal Locations for CCDS 24322.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 129540539 129541474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGAAAAATCGAACATCTGTGAGTGAGTTTATTCTTCTGGGATTGACAAATGACCCAAAGCTAAACATTT
TGATTTTTGTATTTTTATTTATCACTTATATTTTGAGCATTACTGGAAATCTGACCATTATTACCCTCAC
TCTGATAGATTCACACCTCAAGACACCCATGTACTTTTTTCTTCGAAATTTCTCATTCCTAGAAATCTCA
TTTACCACAGTTTCCATTCCTCGGTTCCTTGTGAGCATTGTAACTGGGGATATGACCATCTCCTATAGCT
CTTGCCTGGCTCAGGAGTTCTTCTTCATACTCCTGGGTGCAACTGAATTTTTCCTTCTGACTGCTATGTC
CTATGACCGCTATGTGGCTATCTGTAAGCCCTTGCATTACACCACAATAATGAGCAGCAGGGTCTGCATG
CAGCTTATTGTGAGCTCTTGGCTGGCTGGATTTCTCATCATCTTTCCACCTGTGATCATGGGCCTTCAAC
TGGATTTCTGTGACTCCAACATTATTGACCATTTCACCTGTGACTCCTCCCCCTTGCTGCTCATCTCTTG
CACAGACACAGCCTTCCTAGAGCTCTTTGCATTCTTCCTGGCAGTATTAACCCTCATTGTAACCTTAACA
TTAGTGATTCTGTCCTATTCATTCATCCTTAGGACAATTCTAAGAATCCCCTCTGCTGAGCAAAGGAAAA
AGGCCTTTTCTACCTGTTCCTCTCACATGATTGTTGTGTCCATTTCCTATGGAAGCTGTATATTTATGTA
TGTCAAAACTTCAGCAAAGGAAGGAGTGACTTTGACTAAGGGTATAGCAGTGCTCAACACCTCTGTTGCC
CCAATGCTGAATCCTTTCATTTACACACTTAGAAACAAACAAGTAAAAGAAGCATTTAAGACTTTGATCA
AAAAACGTTTTTCAAACAAAATTTAA

Translation (311 aa):
MKNRTSVSEFILLGLTNDPKLNILIFVFLFITYILSITGNLTIITLTLIDSHLKTPMYFFLRNFSFLEIS
FTTVSIPRFLVSIVTGDMTISYSSCLAQEFFFILLGATEFFLLTAMSYDRYVAICKPLHYTTIMSSRVCM
QLIVSSWLAGFLIIFPPVIMGLQLDFCDSNIIDHFTCDSSPLLLISCTDTAFLELFAFFLAVLTLIVTLT
LVILSYSFILRTILRIPSAEQRKKAFSTCSSHMIVVSISYGSCIFMYVKTSAKEGVTLTKGIAVLNTSVA
PMLNPFIYTLRNKQVKEAFKTLIKKRFSNKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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