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Report for CCDS2442.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2442.2 Public Homo sapiens 2 ASIC4 24 110 108 CCDS HistoryNCBI Gene:55515Re-query CCDS DB by CCDS ID:2442.2Re-query CCDS DB by GeneID:55515See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 2442.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000347842.8 ENSP00000326627.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000347842.8Link to Ensembl Protein Viewer:ENSP00000326627.4Re-query CCDS DB by Nucleotide ID:ENST00000347842Re-query CCDS DB by Protein ID:ENSP00000326627
Original member Current member NCBI NM_182847.3 NP_878267.3 Accepted alive Link to Nucleotide Sequence:NM_182847.3Link to Protein Sequence:NP_878267.3Re-query CCDS DB by Nucleotide ID:NM_182847Re-query CCDS DB by Protein ID:NP_878267Link to BLAST:NP_878267.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_878267.3 520 Q96FT7-1 520 100% 0 0

Chromosomal Locations for CCDS 2442.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 219514725 219515306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219531758 219531902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219532001 219532128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219532315 219532477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219535171 219535324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219537066 219537157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219537242 219537321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219537632 219537736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219537933 219538046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1563 nt):
ATGCCGATCGAGATTGTGTGCAAAATCAAATTTGCTGAGGAGGATGCGAAACCCAAGGAGAAGGAGGCAG
GGGATGAGCAGAGCCTCCTCGGGGCTGTTGCCCCTGGAGCAGCCCCCCGAGACCTGGCCACCTTTGCCAG
CACCAGCACCCTGCATGGACTGGGCCGGGCCTGTGGCCCAGGCCCCCACGGACTGCGCAGAACCCTGTGG
GCACTGGCCCTACTCACCTCGCTGGCTGCCTTCCTGTACCAGGCGGCTGGCCTGGCCCGGGGCTACCTGA
CCCGGCCTCACCTGGTGGCAATGGACCCCGCTGCCCCAGCCCCAGTGGCGGGCTTCCCGGCTGTCACCCT
CTGCAATATCAACCGCTTCCGGCATTCGGCACTCAGCGATGCCGACATCTTCCACCTGGCCAATCTGACA
GGGCTGCCCCCCAAAGACCGGGATGGGCACCGTGCGGCTGGCCTGCGCTACCCAGAGCCTGACATGGTAG
ACATCCTCAACCGCACTGGCCACCAGCTCGCCGACATGCTTAAGAGCTGCAACTTCAGTGGGCATCACTG
CTCCGCCAGCAACTTCTCTGTGGTCTATACTCGCTATGGGAAGTGTTACACCTTCAACGCGGACCCGCGG
AGCTCGCTGCCCAGCCGGGCAGGGGGCATGGGCAGTGGCCTGGAGATCATGCTGGACATCCAGCAGGAGG
AGTACCTGCCCATCTGGAGGGAGACAAATGAGACGTCGTTTGAGGCAGGTATTCGGGTGCAGATCCACAG
CCAGGAGGAGCCGCCCTACATCCACCAGCTGGGGTTCGGGGTGTCCCCAGGCTTCCAGACCTTTGTGTCC
TGCCAGGAACAGCGGCTGACCTACCTGCCCCAGCCCTGGGGCAACTGCCGCGCAGAGAGTGAGCTCAGGG
AGCCTGAGCTTCAGGGCTACTCGGCCTACAGTGTGTCTGCCTGCCGGCTGCGCTGTGAAAAGGAGGCCGT
GCTTCAGCGCTGCCACTGCCGGATGGTGCACATGCCAGACTCCCTGGGTGGGGGCCCTGAGGGCCCGTGC
TTCTGCCCCACCCCCTGCAACCTGACACGCTATGGGAAAGAGATCTCCATGGTCAGGATCCCCAACAGGG
GCTCAGCCCGGTACCTGGCGAGGAAGTACAACCGCAACGAGACCTACATACGGGAGAACTTCCTGGTCCT
AGATGTCTTCTTTGAGGCCCTGACCTCTGAAGCCATGGAGCAGCGAGCAGCCTATGGCCTGTCAGCCCTG
CTGGGAGACCTCGGGGGACAGATGGGCCTGTTCATTGGGGCCAGCATCCTCACGTTGCTGGAGATCCTCG
ACTACATCTATGAGGTGTCCTGGGATCGACTGAAGCGGGTATGGAGGCGTCCCAAGACCCCCCTGCGGAC
CTCCACTGGGGGCATCTCCACTTTGGGGCTTCAGGAGCTGAAGGAACAGAGTCCCTGCCCGAGCCGGGGC
CGAGTGGAGGGTGGGGGGGTCAGCAGTCTGCTCCCCAATCACCACCACCCCCACGGTCCCCCAGGAGGTC
TCTTTGAAGATTTTGCTTGCTAG

Translation (520 aa):
MPIEIVCKIKFAEEDAKPKEKEAGDEQSLLGAVAPGAAPRDLATFASTSTLHGLGRACGPGPHGLRRTLW
ALALLTSLAAFLYQAAGLARGYLTRPHLVAMDPAAPAPVAGFPAVTLCNINRFRHSALSDADIFHLANLT
GLPPKDRDGHRAAGLRYPEPDMVDILNRTGHQLADMLKSCNFSGHHCSASNFSVVYTRYGKCYTFNADPR
SSLPSRAGGMGSGLEIMLDIQQEEYLPIWRETNETSFEAGIRVQIHSQEEPPYIHQLGFGVSPGFQTFVS
CQEQRLTYLPQPWGNCRAESELREPELQGYSAYSVSACRLRCEKEAVLQRCHCRMVHMPDSLGGGPEGPC
FCPTPCNLTRYGKEISMVRIPNRGSARYLARKYNRNETYIRENFLVLDVFFEALTSEAMEQRAAYGLSAL
LGDLGGQMGLFIGASILTLLEILDYIYEVSWDRLKRVWRRPKTPLRTSTGGISTLGLQELKEQSPCPSRG
RVEGGGVSSLLPNHHHPHGPPGGLFEDFAC


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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