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Report for CCDS24863.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24863.1 Public Mus musculus 11 Stx8 23 108 98 CCDS HistoryNCBI Gene:55943Re-query CCDS DB by CCDS ID:24863.1Re-query CCDS DB by GeneID:55943See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24863.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021285.13 ENSMUSP00000021285.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021285.13Link to Ensembl Protein Viewer:ENSMUSP00000021285.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000021285Re-query CCDS DB by Protein ID:ENSMUSP00000021285
Original member Current member NCBI NM_018768.3 NP_061238.1 Accepted alive Link to Nucleotide Sequence:NM_018768.3Link to Protein Sequence:NP_061238.1Re-query CCDS DB by Nucleotide ID:NM_018768Re-query CCDS DB by Protein ID:NP_061238Link to BLAST:NP_061238.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061238.1 236 O88983 236 100% 0 0

Chromosomal Locations for CCDS 24863.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 67966501 67966517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67969772 67969871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67973233 67973327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67984563 67984673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68011315 68011439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68020906 68020998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68109277 68109378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68203706 68203773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (711 nt):
ATGGCCCCGGACCCCTGGTTCTCCACATACGATTCTACGTGTCAGATAGCCCAAGAAATCGCTGAGAAGA
TTCAAGAACGAAATCAGTGTGAAAGAAGAGGTGAAAAGACACCGAAGCTTACCTTGACAATCAGAACGTT
GTTGAAGAATCTGAAGGTAAAGATCGACCTTTTGAAGGACTTACTGCTAAGAGCTGTGTCGACACGCCAG
ATAACACAACTGGAGGGGGATCGAAGACAGAACCTGCTGGATGACCTTGTCACCCGAGAGAGACTGCTCC
TGGCATCGTTTAAGAATGAGGGTGCAGAGCCGGATCTGATCAGGTCCAGCCTGATGAGCGAAGAAGCAAA
GCGAGGAACTCCCAACCCTTGGCTCTGTGAGGAGCCGGAGGAGACCAGAGGTTTGGGTTTTGATGAGATC
CGACAACAGCAGCAGAAAATTATTCAAGAACAGGACGCGGGTCTTGATGCCCTTTCCTCTATCATAAGTC
GCCAAAAACAAATGGGCCAGGAAATTGGGAACGAACTGGATGAACAGAATGAGATCATCGATGACCTTGC
CAACCTCGTTGAGAACACAGATGAGAAGCTTCGAACTGAAGCCAGGCGAGTGACCCTGGTGGACAGAAAG
TCAACTTCCTGTGGGATGATCATGGTGATTTTATTGCTGCTCGTGGCTATTGTGGTCGTTGCAGTGTGGC
CAACCAACTGA

Translation (236 aa):
MAPDPWFSTYDSTCQIAQEIAEKIQERNQCERRGEKTPKLTLTIRTLLKNLKVKIDLLKDLLLRAVSTRQ
ITQLEGDRRQNLLDDLVTRERLLLASFKNEGAEPDLIRSSLMSEEAKRGTPNPWLCEEPEETRGLGFDEI
RQQQQKIIQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVDRK
STSCGMIMVILLLLVAIVVVAVWPTN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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