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Report for CCDS24962.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24962.1 Public Mus musculus 11 Spag7 23 108 98 CCDS HistoryNCBI Gene:216873Re-query CCDS DB by CCDS ID:24962.1Re-query CCDS DB by GeneID:216873See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24962.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018431.12 ENSMUSP00000018431.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018431.12Link to Ensembl Protein Viewer:ENSMUSP00000018431.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000018431Re-query CCDS DB by Protein ID:ENSMUSP00000018431
Original member Current member NCBI NM_172561.3 NP_766149.2 Accepted alive Link to Nucleotide Sequence:NM_172561.3Link to Protein Sequence:NP_766149.2Re-query CCDS DB by Nucleotide ID:NM_172561Re-query CCDS DB by Protein ID:NP_766149Link to BLAST:NP_766149.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766149.2 227 Q7TNE3 227 100% 0 0

Chromosomal Locations for CCDS 24962.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 70664111 70664220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70664320 70664476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70664578 70664667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70664783 70664867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70664988 70665076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70665297 70665364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70669197 70669281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGGCGGACCTACTGGGCTCCATCCTGAGCTCCATGGAGAAACCACCCAGCCTCGGTGACCAGGAGAGTC
GGCGCAAGGCCCGAGAGCAGGCTGCCCGTCTGAAGAAACTACAAGAGCAAGACAAACAGCAGAAAGTGGA
GTTTCGGAAAAGGATGGAGAAAGAGGTGTCTGATTTCATCCAGGACAGTGGACAGGTCAAGAAAAAGTTT
CAGCCTATGAACAAGATAGAGCGGAGCATACTACATGATGTGGTAGAGGTGGCTGGCCTCACATCCTTCT
CCTTTGGAGAAGATGATGACTGTCGCTATGTCATGATCTTCAAAAAGGAGTTTGCACCCTCAGATGAAGA
GCTAGACTCCTACCGTCATGGAGAGGAGTGGGACCCCCAGAAGGCTGAGGAGAAGCGGAAGCTAAAGGAG
CTGGCTCAGAAGCAGGAGGAAGAGGCAGCGCAGCAGGGACCTGCGGTTGTGAGTCCTGCCAGCGACTACA
AGGACAAGTATAGCCATCTTATTGGCAAAGGAGCAGCCAAAGATGCAGCCCACATGCTACAGGCCAACAA
GACCTATGGCTGTGTTCCTGTGGCCAACAAGCGGGACACACGGTCCATAGAGGAGGCCATGAATGAGATC
AGAGCCAAGAAACGCCTGCGGCAGAGTGGTGAAGAGTTGCCAACTACCTCCTAG

Translation (227 aa):
MADLLGSILSSMEKPPSLGDQESRRKAREQAARLKKLQEQDKQQKVEFRKRMEKEVSDFIQDSGQVKKKF
QPMNKIERSILHDVVEVAGLTSFSFGEDDDCRYVMIFKKEFAPSDEELDSYRHGEEWDPQKAEEKRKLKE
LAQKQEEEAAQQGPAVVSPASDYKDKYSHLIGKGAAKDAAHMLQANKTYGCVPVANKRDTRSIEEAMNEI
RAKKRLRQSGEELPTTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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