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Report for CCDS24971.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24971.1 Public Mus musculus 11 Dhx33 23 108 98 CCDS HistoryNCBI Gene:216877Re-query CCDS DB by CCDS ID:24971.1Re-query CCDS DB by GeneID:216877See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24971.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108527.7 ENSMUSP00000104167.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108527.7Link to Ensembl Protein Viewer:ENSMUSP00000104167.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108527Re-query CCDS DB by Protein ID:ENSMUSP00000104167
Original member Current member NCBI NM_178367.4 NP_848144.3 Accepted alive Link to Nucleotide Sequence:NM_178367.4Link to Protein Sequence:NP_848144.3Re-query CCDS DB by Nucleotide ID:NM_178367Re-query CCDS DB by Protein ID:NP_848144Link to BLAST:NP_848144.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848144.3 698 Q80VY9 698 100% 0 0

Chromosomal Locations for CCDS 24971.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 70987119 70987427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70989067 70989153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70992108 70992311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70992659 70992786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70993610 70993698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70993857 70994016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70995139 70995250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70995888 70996073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70999370 70999540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70999721 70999948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 71001519 71001679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 71004117 71004378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2097 nt):
ATGCCGGAGGAGGCGAGCCTCCCGCCCGCTAAGAGATTCCGGCCGGGCTCCTGCCCTCCCGGGAGACGAG
TAGTGATGCTGTTGACGGCTGGCGGCGGCGGCGGAGCTGGAGGAGGCCGGAGGCAGACGCCGCCGCTGGC
CCAGCCTTCGGCCAGTCCCTACCGCGAGGCCCTGGAGCTGCAGCGCCGGAGTCTGCCCATCTTCCGGGCG
CGGGGGCAGCTATTGGCTCAGCTCCGAAACCTGGACAACGCGGTCCTCATCGGGGAAACTGGCTCTGGGA
AAACAACTCAGATCCCACAGTACCTCTATGAAGGGGGAATTAGCCGCCAGGGCATCATCGCTGTGACCCA
GCCCCGTCGAGTGGCTGCCATCTCTCTTGCCACCAGAGTCTCAGATGAGAAGAGGACAGAACTCGGGAAG
CTGGTTGGCTATACAGTGCGCTTTGAGGATGTCACCTCAGAAGACACCAGGATCAAGTTCCTGACAGATG
GCATGCTTCTGCGTGAAGCAATTTCAGACTCCTTGCTTCGGAAGTACAGCTGTGTCATTTTGGACGAGGC
CCATGAGCGGACTATTCACACAGATGTGCTCTTTGGAGTGGTGAAGACTGCACAGAAGAGGCGAAAGGAG
CTAGGGAAACTGCCTCTCAAAGTGATTGTGATGTCAGCTACCATGGATGTCGACCTGTTTTCTCAGTACT
TCAATAGAGCCCCTGTCCTTTACCTTGAGGGTCGGCAGCATCCAATCCAGATCTTCTATACCAAACAGCC
TCAGCAGGATTACCTGCATGCAGCCCTTGTCTCAGTCTTCCAGATCCACCAGGAAGCTCCTGCTTCTCAA
GACATCCTGGTGTTCCTCACTGGTCAGGAGGAGATCGAAGCAATGAGCAAGACCTGCAGAGACATCGCAA
GGCACCTCCCAGATGGCTGCCCTTCAATGCTCGTCCTTCCTCTGTACGCCTCCCTGCCCTATTCGCAGCA
GCTTCGAGTCTTTCAAGGGGCCCCAAAGGGCTATCGCAAAGTGATCATTTCAACCAACATCGCTGAAACC
TCCATAACCATTACAGGAATAAAATATGTAGTTGACACGGGCATGGTTAAAGCAAAGAAGTATAACCCTG
ACAGTGGTCTTGAGGTACTAGCTGTACAGAGAGTATCAAAGACCCAGGCCTGGCAGCGCACAGGCAGGGC
TGGGCGAGAGGACAGTGGCATCTGCTACCGACTCTACACTGAGGACGAGTTTGAGAAGTTCGAGAAGATG
ACGGTGCCAGAGATCCAGAGGTGTAACCTGGCCAGTGTAATACTTCAGCTCCTAGCAATGAAAGTCCCAA
ATGTGCTCACCTTTGACTTCATGTCCAAACCTTCTCCAGATCACATTGAGGCGGCCATTGCCCAGCTGGA
CCTGTTAGGTGCTCTTGAACATAAGGATGACCAGCTTACCCTGACTCCAATTGGAAGAAAGATGGCAGCA
TTCCCTTTAGAGCCCAGATTTGCCAAAACTATCCTCCTGTCCTCCAAATTCCACTGTACCGAAGAGATTC
TGACCATAGTCTCCCTGCTATCTGTGGACAGTGTCCTTTACAACCCTCCTGCCCGGAGAGATGAGGTGCA
GAGTGTCCGGAAGAAATTCATATCCAGTGAGGGGGATCACATCACCCTGCTCAATATCTATCGGACCTTC
AAAAACATCGGTGGGAATAAGGACTGGTGCAAAGAGAATTTTGTCAACAGCAAGAATATGCTGCTAGTAG
CTGAAGTCAGAGCACAGCTGAGAGAAATCTGCTTAAAGATGTCAATGCCAATCATGTCATCTCGAGGGGA
CATGGAGAGTGTCCGCCGTTGCATGGCTCACAGCCTCTTTATGAATACTGCTGAACTCCAGACAGATGGC
ACCTATGCCACCACGGACACACATCAGCCAGTGGCCATCCACCCATCATCTGTCCTCTTCCACTGCAAGC
CTGCCTGCGTGGTCTACACTTCACTGCTCTACACCAACAAATGCTACATGCGTGACCTCTGTGTGGTGGA
TGCCGAGTGGCTCTACGAGGCTGCCCCTGACTACTTCAGGAGGAAGCTGAGAACGGCCAGAAACTGA

Translation (698 aa):
MPEEASLPPAKRFRPGSCPPGRRVVMLLTAGGGGGAGGGRRQTPPLAQPSASPYREALELQRRSLPIFRA
RGQLLAQLRNLDNAVLIGETGSGKTTQIPQYLYEGGISRQGIIAVTQPRRVAAISLATRVSDEKRTELGK
LVGYTVRFEDVTSEDTRIKFLTDGMLLREAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKTAQKRRKE
LGKLPLKVIVMSATMDVDLFSQYFNRAPVLYLEGRQHPIQIFYTKQPQQDYLHAALVSVFQIHQEAPASQ
DILVFLTGQEEIEAMSKTCRDIARHLPDGCPSMLVLPLYASLPYSQQLRVFQGAPKGYRKVIISTNIAET
SITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRTGRAGREDSGICYRLYTEDEFEKFEKM
TVPEIQRCNLASVILQLLAMKVPNVLTFDFMSKPSPDHIEAAIAQLDLLGALEHKDDQLTLTPIGRKMAA
FPLEPRFAKTILLSSKFHCTEEILTIVSLLSVDSVLYNPPARRDEVQSVRKKFISSEGDHITLLNIYRTF
KNIGGNKDWCKENFVNSKNMLLVAEVRAQLREICLKMSMPIMSSRGDMESVRRCMAHSLFMNTAELQTDG
TYATTDTHQPVAIHPSSVLFHCKPACVVYTSLLYTNKCYMRDLCVVDAEWLYEAAPDYFRRKLRTARN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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