NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25526.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25526.1 Public Mus musculus 11 Crhr1 23 108 98 CCDS HistoryNCBI Gene:12921Re-query CCDS DB by CCDS ID:25526.1Re-query CCDS DB by GeneID:12921See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25526.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093925.4 ENSMUSP00000091455.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093925.4Link to Ensembl Protein Viewer:ENSMUSP00000091455.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000093925Re-query CCDS DB by Protein ID:ENSMUSP00000091455
Original member Current member NCBI NM_007762.5 NP_031788.1 Accepted alive Link to Nucleotide Sequence:NM_007762.5Link to Protein Sequence:NP_031788.1Re-query CCDS DB by Nucleotide ID:NM_007762Re-query CCDS DB by Protein ID:NP_031788Link to BLAST:NP_031788.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031788.1 415 P35347 415 100% 0 0

Chromosomal Locations for CCDS 25526.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 104133072 104133104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 104153521 104153608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 104159252 104159371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 104163804 104163889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 104169056 104169162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 104169833 104169953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 104170122 104170275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 104170480 104170540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 104172911 104172983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 104173306 104173391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 104173595 104173730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 104173889 104173930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 104174388 104174528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGGGACAGCGCCCGCAGCTCCGGCTCGTGAAGGCCCTTCTCCTTCTGGGGCTGAACCCCGTCTCCACCT
CCCTCCAGGATCAGCAGTGTGAGAGCCTGTCCCTGGCCAGCAATGTCTCTGGCCTGCAGTGCAATGCCTC
CGTGGACCTCATTGGCACCTGCTGGCCCAGGAGCCCTGCAGGGCAGTTGGTGGTTCGGCCCTGCCCTGCC
TTTTTCTACGGTGTCCGCTACAACACCACAAACAATGGCTACCGGGAATGCCTGGCCAACGGCAGCTGGG
CAGCCCGTGTGAATTATTCTGAGTGCCAGGAGATTCTCAACGAAGAGAAGAAGAGCAAAGTGCACTACCA
CATTGCCGTCATCATCAACTACCTGGGCCACTGCATCTCCCTGGTGGCCCTCCTGGTGGCCTTTGTCCTC
TTCCTGCGGCTCAGGAGCATCCGGTGCCTGAGGAACATCATCCACTGGAACCTCATCTCGGCTTTCATCC
TGCGCAACGCCACGTGGTTTGTGGTCCAGCTCACCGTGAGCCCCGAGGTCCACCAGAGCAACGTGGCCTG
GTGCAGGCTGGTGACAGCCGCCTACAACTACTTCCACGTAACCAACTTCTTCTGGATGTTCGGTGAGGGC
TGCTACCTGCACACAGCCATCGTACTCACGTACTCCACCGACCGTCTGCGCAAGTGGATGTTCGTCTGCA
TCGGCTGGGGTGTGCCTTTCCCCATCATTGTGGCTTGGGCCATTGGGAAACTTTACTACGACAATGAAAA
GTGCTGGTTTGGCAAACGTCCTGGAGTATATACTGACTACATCTACCAGGGCCCCATGATCCTGGTCCTG
CTGATCAACTTTATCTTTCTCTTCAACATTGTCCGCATCCTCATGACCAAACTCCGAGCATCCACCACAT
CTGAGACTATTCAGTACAGGAAGGCTGTGAAGGCCACTCTGGTGCTCTTGCCCCTCCTGGGCATCACCTA
CATGTTGTTCTTCGTCAACCCTGGGGAGGACGAGGTCTCCAGGGTTGTCTTCATCTACTTCAACTCTTTC
CTGGAGTCCTTTCAGGGCTTCTTCGTGTCTGTGTTCTATTGTTTTCTGAACAGTGAGGTCCGCTCTGCCA
TCCGGAAGAGGTGGCGGCGATGGCAGGACAAGCACTCCATCAGAGCCCGAGTGGCCCGCGCCATGTCCAT
CCCCACCTCCCCCACCAGAGTCAGCTTCCACAGCATCAAGCAGTCCACAGCAGTGTGA

Translation (415 aa):
MGQRPQLRLVKALLLLGLNPVSTSLQDQQCESLSLASNVSGLQCNASVDLIGTCWPRSPAGQLVVRPCPA
FFYGVRYNTTNNGYRECLANGSWAARVNYSECQEILNEEKKSKVHYHIAVIINYLGHCISLVALLVAFVL
FLRLRSIRCLRNIIHWNLISAFILRNATWFVVQLTVSPEVHQSNVAWCRLVTAAYNYFHVTNFFWMFGEG
CYLHTAIVLTYSTDRLRKWMFVCIGWGVPFPIIVAWAIGKLYYDNEKCWFGKRPGVYTDYIYQGPMILVL
LINFIFLFNIVRILMTKLRASTTSETIQYRKAVKATLVLLPLLGITYMLFFVNPGEDEVSRVVFIYFNSF
LESFQGFFVSVFYCFLNSEVRSAIRKRWRRWQDKHSIRARVARAMSIPTSPTRVSFHSIKQSTAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH