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Report for CCDS25616.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25616.1 Public Mus musculus 11 Cd300c2 23 108 98 CCDS HistoryNCBI Gene:140497Re-query CCDS DB by CCDS ID:25616.1Re-query CCDS DB by GeneID:140497See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25616.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092464.9 ENSMUSP00000090121.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092464.9Link to Ensembl Protein Viewer:ENSMUSP00000090121.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000092464Re-query CCDS DB by Protein ID:ENSMUSP00000090121
Original member NCBI NM_134158.1 NP_598919.1 Updated not alive Link to Nucleotide Sequence:NM_134158.1Link to Protein Sequence:NP_598919.1Re-query CCDS DB by Nucleotide ID:NM_134158Re-query CCDS DB by Protein ID:NP_598919
Current member NCBI NM_134158.2 NP_598919.1 Accepted alive Link to Nucleotide Sequence:NM_134158.2Link to Protein Sequence:NP_598919.1Re-query CCDS DB by Nucleotide ID:NM_134158Re-query CCDS DB by Protein ID:NP_598919Link to BLAST:NP_598919.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598919.1 228 Q7TSN2 228 100% 0 0

Chromosomal Locations for CCDS 25616.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 114996888 114997035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 114998215 114998335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115000629 115000985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115001487 115001547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (687 nt):
ATGATTCCCAGAGTAATAAGATTGTGGCTGCCTTCAGCTCTGTTCCTCTCTCAGGTCCCAGGCTGTGTCC
CACTGCATGGCCCCAGCACTATCACAGGCGCTGTTGGGGAATCGCTCAGTGTGTCATGTCAATACGAGGA
GAAATTCAAGACTAAGGACAAATTCTGGTGCAGAGGGTCACTGAAGGTACTCTGTAAAGATATTGTCAAG
ACCAGCAGCTCAGAAGAAGTTAGGAATGGCCGAGTGACCATCAGGGACCATCCAGACAACCTCACCTTCA
CAGTGACCTATGAGAGCCTCACCCTGGAGGATGCAGACACCTACATGTGTGCGGTGGATATATCACTTTT
TGATGGCTCCTTGGGGTTCGATAAGTACTTCAAGATTGAGTTGTCTGTGGTTCCAAGTGAGGACCCAGTC
ACAGGTTCGAGCCTTGAGAGTGGTAGAGATATCCTGGAATCCCCCACATCCTCAGTTGGGCACACTCATC
CCAGTGTGACCACAGATGACACAATTCCTGCTCCCTGCCCTCAGCCTCGGTCTCTTCGGAGCAGCCTCTA
CTTCTGGGTCCTGGTGTCTCTGAAGTTGTTCCTGTTCCTGAGCATGCTTGGTGCTGTCCTCTGGGTGAAC
AGGCCTCAGAGGTGCTCTGGGGGAAGCAGCTCTCGGCCCTGTTATGAGAACCAGTGA

Translation (228 aa):
MIPRVIRLWLPSALFLSQVPGCVPLHGPSTITGAVGESLSVSCQYEEKFKTKDKFWCRGSLKVLCKDIVK
TSSSEEVRNGRVTIRDHPDNLTFTVTYESLTLEDADTYMCAVDISLFDGSLGFDKYFKIELSVVPSEDPV
TGSSLESGRDILESPTSSVGHTHPSVTTDDTIPAPCPQPRSLRSSLYFWVLVSLKLFLFLSMLGAVLWVN
RPQRCSGGSSSRPCYENQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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