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Report for CCDS2588.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2588.1 Public Homo sapiens 3 JAGN1 24 110 108 CCDS HistoryNCBI Gene:84522Re-query CCDS DB by CCDS ID:2588.1Re-query CCDS DB by GeneID:84522See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2588.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000647897.1 ENSP00000496942.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000647897.1Link to Ensembl Protein Viewer:ENSP00000496942.1Re-query CCDS DB by Nucleotide ID:ENST00000647897Re-query CCDS DB by Protein ID:ENSP00000496942
Original member Current member NCBI NM_032492.4 NP_115881.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032492.4Link to Protein Sequence:NP_115881.3Re-query CCDS DB by Nucleotide ID:NM_032492Re-query CCDS DB by Protein ID:NP_115881Link to BLAST:NP_115881.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115881.3 183 Q8N5M9 183 100% 0 0

Chromosomal Locations for CCDS 2588.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 9890723 9890811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9892915 9893377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (552 nt):
ATGGCGTCTCGAGCAGGCCCGCGAGCGGCCGGCACCGACGGCAGCGACTTTCAGCACCGGGAGCGCGTCG
CCATGCACTACCAGATGAGTGTGACTCTCAAGTATGAAATCAAGAAGCTGATCTACGTACATCTGGTCAT
ATGGCTGCTGCTGGTTGCTAAGATGAGCGTGGGACACCTGAGGCTCTTGTCACATGATCAGGTGGCCATG
CCCTATCAGTGGGAATACCCGTATTTGCTGAGCATTTTGCCCTCTCTCTTGGGCCTTCTCTCCTTTCCCC
GCAACAACATTAGCTACCTGGTGCTCTCCATGATCAGCATGGGACTCTTTTCCATCGCTCCACTCATTTA
TGGCAGCATGGAGATGTTCCCTGCTGCACAGCAGCTCTACCGCCATGGCAAGGCCTACCGTTTCCTCTTT
GGTTTTTCTGCCGTTTCCATCATGTACCTGGTGTTGGTGTTGGCAGTGCAAGTGCATGCCTGGCAGTTGT
ACTACAGCAAGAAGCTCCTAGACTCTTGGTTCACCAGCACACAGGAGAAGAAGCATAAATGA

Translation (183 aa):
MASRAGPRAAGTDGSDFQHRERVAMHYQMSVTLKYEIKKLIYVHLVIWLLLVAKMSVGHLRLLSHDQVAM
PYQWEYPYLLSILPSLLGLLSFPRNNISYLVLSMISMGLFSIAPLIYGSMEMFPAAQQLYRHGKAYRFLF
GFSAVSIMYLVLVLAVQVHAWQLYYSKKLLDSWFTSTQEKKHK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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