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Report for CCDS26137.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26137.1 Public Mus musculus 12 Serpina1f 23 108 98 CCDS HistoryNCBI Gene:68348Re-query CCDS DB by CCDS ID:26137.1Re-query CCDS DB by GeneID:68348See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26137.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021490.11 ENSMUSP00000021490.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021490.11Link to Ensembl Protein Viewer:ENSMUSP00000021490.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000021490Re-query CCDS DB by Protein ID:ENSMUSP00000021490
Original member Current member EBI ENSMUST00000118101.1 ENSMUSP00000113736.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118101.1Link to Ensembl Protein Viewer:ENSMUSP00000113736.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118101Re-query CCDS DB by Protein ID:ENSMUSP00000113736
Original member Current member NCBI NM_026687.2 NP_080963.2 Accepted alive Link to Nucleotide Sequence:NM_026687.2Link to Protein Sequence:NP_080963.2Re-query CCDS DB by Nucleotide ID:NM_026687Re-query CCDS DB by Protein ID:NP_080963Link to BLAST:NP_080963.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080963.2 411 Q9DCQ7-1 411 98.7835% 0 5

Chromosomal Locations for CCDS 26137.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 103689732 103689920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103690765 103690909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103691743 103692016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103693394 103694021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1236 nt):
ATGACAACACCCTTTTCCTCCCATGGACTCCTCCTGCTAGTGGGCTTGTGCTGTCTGCTTCTCATAACCA
AGACTAAACATGAAAAACTCTATGAAGACCCAAGCATTGATCCCTTCCAGTGCCGGAAGGTGGCTCTTAC
CATCTGCAATGTCTCCATCACCTTGTTCAAAAAGATGGCCCAACTGTCAGGAAATGGAAATATTTTATTC
TCCCCGATTAGAGTCATTGCTGCCATTTCAATGCTGTCCCTGGGATCCAATGGCAACTTAAGCAAACACA
TCCTGGAGACTCTAAGGTTCAACAAAACAGGCTTGCCTGAAGCGGAGATCCACAAGTGTTTCTGGTATCT
GCTCCATTCCATCCACCAGACTGAAGAGCCATCATCACTACAAACTGGTAGCAGCGTGTTCATCCACCAG
GACCTGACATCAGTAGACAAATTTGTGAAAGGAGTCAAGGACCTATACCATTCTGACATGATCTCCATCA
ACTTTACAGACAGCAGTCAGGCCAAGACACAGATCAACAATTACGTGATGGAGAAAAGCCAGAAGGAAAT
AGTGAACATTGTCAAGAACCTGGAGAGTGATACATTCCTGGCTGTGGTGAACTACATTATCTGGAATGCC
AAACTTGACAGCAACTTTGGCTGCCGGTCCGTCAAAGTGAAGGACTACCACTTAGGATACGGCATGACAA
TCAAGGTACCGATGATCCATAACATGGCCATGCATTACTTGTTCCGAGTCGAGGATCTGTCTAGCACGGT
GCTGATGCTTACTCTGCTCACAGGCAACTTCGCAACCTACTTCATCATACCCGATCCAGGGAAGATGCAG
AAGGTGGAACAGAGCCTAACCTACCCACACTTCCGCCGGATGAGACGACAATTATTGACAAGGTTGGTTG
ATTTAGAGATACCAGAACTCTCATTGTCTGAGACCCATGACTTGGAGTCAATGATGAGTCTACTAGGAAT
CACCTATGTTTTCAACAGTGGCACCAATAGCTCTGACATGAATGACACACTTCAGAAGTCCTTCAAGGTG
GTAAGTAAGGCTGTGCTGACCATCGATGAAAAGGGGTCAAAGCCTAGTACAAACTCATGCTTTAAAAAGC
TCGGATCGACTGATATGGGCCGGATGCAGCTCAACAGACCTTTCCTCATCTTCATCCAGGATCACACAAA
TGATGTCCCCCTCTTTTTAGGCAGAGTGGTAAATCCCCAGAACTAA

Translation (411 aa):
MTTPFSSHGLLLLVGLCCLLLITKTKHEKLYEDPSIDPFQCRKVALTICNVSITLFKKMAQLSGNGNILF
SPIRVIAAISMLSLGSNGNLSKHILETLRFNKTGLPEAEIHKCFWYLLHSIHQTEEPSSLQTGSSVFIHQ
DLTSVDKFVKGVKDLYHSDMISINFTDSSQAKTQINNYVMEKSQKEIVNIVKNLESDTFLAVVNYIIWNA
KLDSNFGCRSVKVKDYHLGYGMTIKVPMIHNMAMHYLFRVEDLSSTVLMLTLLTGNFATYFIIPDPGKMQ
KVEQSLTYPHFRRMRRQLLTRLVDLEIPELSLSETHDLESMMSLLGITYVFNSGTNSSDMNDTLQKSFKV
VSKAVLTIDEKGSKPSTNSCFKKLGSTDMGRMQLNRPFLIFIQDHTNDVPLFLGRVVNPQN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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