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Report for CCDS26242.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26242.1 Public Mus musculus 13 Prl2c5 23 108 98 CCDS HistoryNCBI Gene:107849Re-query CCDS DB by CCDS ID:26242.1Re-query CCDS DB by GeneID:107849See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26242.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021778.13 ENSMUSP00000021778.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021778.13Link to Ensembl Protein Viewer:ENSMUSP00000021778.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000021778Re-query CCDS DB by Protein ID:ENSMUSP00000021778
Original member Current member NCBI NM_181852.2 NP_862900.1 Accepted alive Link to Nucleotide Sequence:NM_181852.2Link to Protein Sequence:NP_862900.1Re-query CCDS DB by Nucleotide ID:NM_181852Re-query CCDS DB by Protein ID:NP_862900Link to BLAST:NP_862900.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_862900.1 222 Q9JLV9-1 222 100% 0 0

Chromosomal Locations for CCDS 26242.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 13182782 13182812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13185790 13185965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13189368 13189475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13190586 13190768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13191645 13191815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (669 nt):
ATGCTCCCTTCTTTGATTCAACCATGCTCCTGGATACTGCTCCTACTACTGGTGAACAGCTCGTTATTGT
GGAAGAATGTTGCATCATTGCCCATGTGTGCAATGAGGAATGATCGTTGCTTTATGTTCTTTGAAGACAC
ATTTGAATTAGCCGGCAGTTTGTCTCATAATATCAGTATAGAAGTTTCAGAACTGTTCACTGAGTTTGAA
AAACATTATTCTAACGTGCCTGGGCTCAGAGACAAAAGCCCCATGAGATGCCATACTTCTTTCCTTCCAA
CTCCAGAAAACAAGGAACAAGCCAGGCACATACGCTATGAAGCTCTTCTGAAATCAGGAGACATGATTTT
GGATGCCTGGGAAAACCCTCTGGACTATCTAGTGAGTGAATTATCTACCATAAAAAATGTCCCTGATATA
ATCATCTCCAAAGCCACAGACATAAAGAAAAAGATCAACGCAGTCCAGAACGGGGTTAATGCCCTCATGA
GCACCATGAATGGAGATGAAGAAAATAAGAACCCTGCCTGGTTCTTGCAATCTGACAATGAAGATGCTCG
CATTCGTTCTTCATATGGCATGATCAGCTGCCTAGACAATGACTTTAAGAAGGTTGATATTTATCTCAAC
ATCCTGAAGTGTTACATGTTAAAAATAGATAACTGCTGA

Translation (222 aa):
MLPSLIQPCSWILLLLLVNSSLLWKNVASLPMCAMRNDRCFMFFEDTFELAGSLSHNISIEVSELFTEFE
KHYSNVPGLRDKSPMRCHTSFLPTPENKEQARHIRYEALLKSGDMILDAWENPLDYLVSELSTIKNVPDI
IISKATDIKKKINAVQNGVNALMSTMNGDEENKNPAWFLQSDNEDARIRSSYGMISCLDNDFKKVDIYLN
ILKCYMLKIDNC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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