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Report for CCDS26669.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26669.1 Public Mus musculus 13 Edil3 23 108 98 CCDS HistoryNCBI Gene:13612Re-query CCDS DB by CCDS ID:26669.1Re-query CCDS DB by GeneID:13612See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26669.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081769.12 ENSMUSP00000080462.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081769.12Link to Ensembl Protein Viewer:ENSMUSP00000080462.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000081769Re-query CCDS DB by Protein ID:ENSMUSP00000080462
Original member NCBI NM_001037987.3 NP_001033076.1 Updated not alive Link to Nucleotide Sequence:NM_001037987.3Link to Protein Sequence:NP_001033076.1Re-query CCDS DB by Nucleotide ID:NM_001037987Re-query CCDS DB by Protein ID:NP_001033076
Current member NCBI NM_001037987.4 NP_001033076.1 Accepted alive Link to Nucleotide Sequence:NM_001037987.4Link to Protein Sequence:NP_001033076.1Re-query CCDS DB by Nucleotide ID:NM_001037987Re-query CCDS DB by Protein ID:NP_001033076Link to BLAST:NP_001033076.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001033076.1 480 O35474-1 480 100% 0 0

Chromosomal Locations for CCDS 26669.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 88821982 88822048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 88944820 88944948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 88977755 88977784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 89042432 89042560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 89094551 89094664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 89131674 89131855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 89177145 89177300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 89180236 89180380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 89184679 89184863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 89289419 89289574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 89319671 89319820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1443 nt):
ATGAAGCACTTGGTAGCAGCCTGGCTTTTGGTTGGACTCAGCCTCGGGGTGCCCCAGTTCGGCAAAGGTG
ACATTTGCAACCCGAACCCCTGTGAAAATGGTGGCATCTGTCTGTCAGGACTGGCTGATGATTCCTTTTC
CTGTGAGTGTCCAGAAGGCTTCGCAGGTCCGAACTGCTCTAGTGTTGTGGAGGTTGCATCAGATGAAGAA
AAGCCTACTTCAGCAGGTCCCTGCATCCCTAACCCATGCCATAACGGAGGAACCTGTGAGATAAGCGAAG
CCTATCGAGGAGACACATTCATAGGCTATGTTTGTAAATGTCCTCGGGGATTTAATGGGATTCACTGTCA
GCACAATATAAATGAATGTGAAGCTGAGCCTTGCAGAAATGGCGGAATATGTACCGACCTTGTTGCTAAC
TACTCTTGTGAATGCCCAGGAGAATTTATGGGACGAAATTGTCAATATAAATGCTCTGGGCCATTGGGAA
TCGAAGGTGGGATCATATCTAATCAGCAAATCACAGCTTCATCTACTCACCGAGCTCTTTTTGGACTCCA
GAAGTGGTATCCCTACTATGCTCGACTTAATAAGAAGGGCCTTATAAATGCCTGGACAGCTGCTGAAAAT
GACAGATGGCCATGGATTCAGATAAATTTGCAAAGAAAAATGAGAGTCACTGGTGTTATTACCCAAGGAG
CAAAAAGGATTGGAAGCCCAGAGTACATAAAATCCTACAAAATTGCCTACAGCAATGACGGGAAGACCTG
GGCAATGTACAAAGTAAAAGGCACCAATGAAGAGATGGTCTTTCGTGGAAATGTTGATAACAACACACCA
TATGCTAATTCTTTCACACCCCCAATCAAAGCTCAGTATGTAAGACTCTACCCCCAAATTTGTCGAAGGC
ATTGTACTTTAAGAATGGAACTTCTTGGCTGTGAGCTCTCAGGCTGTTCAGAACCTTTGGGGATGAAATC
AGGGCATATACAAGACTACCAGATCACTGCCTCCAGCGTCTTCAGAACACTCAACATGGACATGTTTACT
TGGGAACCAAGGAAAGCCAGGCTGGACAAGCAAGGCAAAGTAAATGCCTGGACTTCCGGCCATAACGACC
AGTCACAATGGTTACAGGTTGATCTTCTTGTCCCTACTAAGGTGACAGGCATCATTACACAAGGAGCTAA
AGATTTTGGTCACGTGCAGTTTGTTGGGTCATACAAACTAGCTTACAGCAATGATGGAGAACACTGGATG
GTGCACCAGGATGAAAAACAGAGAAAAGACAAGGTTTTTCAAGGCAATTTTGACAATGACACTCACAGGA
AAAATGTCATCGACCCTCCCATCTATGCACGATTCATAAGAATCCTTCCTTGGTCCTGGTATGGAAGGAT
CACTCTGCGGTCAGAGCTGCTGGGCTGCGCAGAGGAGGAATGA

Translation (480 aa):
MKHLVAAWLLVGLSLGVPQFGKGDICNPNPCENGGICLSGLADDSFSCECPEGFAGPNCSSVVEVASDEE
KPTSAGPCIPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEAEPCRNGGICTDLVAN
YSCECPGEFMGRNCQYKCSGPLGIEGGIISNQQITASSTHRALFGLQKWYPYYARLNKKGLINAWTAAEN
DRWPWIQINLQRKMRVTGVITQGAKRIGSPEYIKSYKIAYSNDGKTWAMYKVKGTNEEMVFRGNVDNNTP
YANSFTPPIKAQYVRLYPQICRRHCTLRMELLGCELSGCSEPLGMKSGHIQDYQITASSVFRTLNMDMFT
WEPRKARLDKQGKVNAWTSGHNDQSQWLQVDLLVPTKVTGIITQGAKDFGHVQFVGSYKLAYSNDGEHWM
VHQDEKQRKDKVFQGNFDNDTHRKNVIDPPIYARFIRILPWSWYGRITLRSELLGCAEEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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