NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS2699.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2699.1 Public Homo sapiens 3 SEC22C 24 110 108 CCDS HistoryNCBI Gene:9117Re-query CCDS DB by CCDS ID:2699.1Re-query CCDS DB by GeneID:9117See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2699.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000273156.11 ENSP00000273156.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000273156.11Link to Ensembl Protein Viewer:ENSP00000273156.7Re-query CCDS DB by Nucleotide ID:ENST00000273156Re-query CCDS DB by Protein ID:ENSP00000273156
Original member Current member EBI ENST00000417572.5 ENSP00000407564.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000417572.5Link to Ensembl Protein Viewer:ENSP00000407564.1Re-query CCDS DB by Nucleotide ID:ENST00000417572Re-query CCDS DB by Protein ID:ENSP00000407564
Original member Current member NCBI NM_001201572.2 NP_001188501.1 Accepted alive Link to Nucleotide Sequence:NM_001201572.2Link to Protein Sequence:NP_001188501.1Re-query CCDS DB by Nucleotide ID:NM_001201572Re-query CCDS DB by Protein ID:NP_001188501Link to BLAST:NP_001188501.1
Original member Current member NCBI NM_004206.4 NP_004197.1 Accepted alive Link to Nucleotide Sequence:NM_004206.4Link to Protein Sequence:NP_004197.1Re-query CCDS DB by Nucleotide ID:NM_004206Re-query CCDS DB by Protein ID:NP_004197Link to BLAST:NP_004197.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001188501.1 250 Q9BRL7-2 250 100% 0 0
NP_004197.1 250 Q9BRL7-2 250 100% 0 0

Chromosomal Locations for CCDS 2699.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 42548616 42548657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42555930 42555995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42557578 42557696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42561117 42561296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42563523 42563686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42568865 42569046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (753 nt):
ATGTCCGTGATCTTTTTTGCCTGCGTGGTACGGGTAAGGGATGGACTGCCCCTCTCAGCCTCTACTGATT
TTTACCACACCCAAGATTTTTTGGAATGGAGGAGACGGCTCAAGAGTTTAGCCTTGCGACTGGCCCAGTA
TCCAGGTCGAGGTTCTGCAGAAGGTTGTGACTTTAGTATACATTTTTCTTCTTTCGGGGACGTGGCCTGC
ATGGCTATCTGCTCCTGCCAGTGTCCAGCAGCCATGGCCTTCTGCTTCCTGGAGACCCTGTGGTGGGAAT
TCACAGCTTCCTATGACACTACCTGCATTGGCCTAGCCTCCAGGCCATACGCTTTTCTTGAGTTTGACAG
CATCATTCAGAAAGTGAAGTGGCATTTTAACTATGTAAGTTCCTCTCAGATGGAGTGCAGCTTGGAAAAA
ATTCAGGAGGAGCTCAAGTTGCAGCCTCCAGCGGTTCTCACTCTGGAGGACACAGATGTGGCAAATGGGG
TGATGAATGGTCACACACCGATGCACTTGGAGCCTGCTCCTAATTTCCGAATGGAACCAGTGACAGCCCT
GGGTATCCTCTCCCTCATTCTCAACATCATGTGTGCTGCCCTGAATCTCATTCGAGGAGTTCACCTTGCA
GAACATTCTTTACAGGTTGCCCATGAGGAAATTGGAAACATTCTGGCTTTTCTTGTTCCTTTCGTAGCCT
GCATTTTCCAGGATCCAAGGAGCTGGTTCTGCTGGTTGGACCAAACCTCGTGA

Translation (250 aa):
MSVIFFACVVRVRDGLPLSASTDFYHTQDFLEWRRRLKSLALRLAQYPGRGSAEGCDFSIHFSSFGDVAC
MAICSCQCPAAMAFCFLETLWWEFTASYDTTCIGLASRPYAFLEFDSIIQKVKWHFNYVSSSQMECSLEK
IQEELKLQPPAVLTLEDTDVANGVMNGHTPMHLEPAPNFRMEPVTALGILSLILNIMCAALNLIRGVHLA
EHSLQVAHEEIGNILAFLVPFVACIFQDPRSWFCWLDQTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH