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Report for CCDS27129.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27129.1 Public Mus musculus 14 Ltb4r1 23 108 98 CCDS HistoryNCBI Gene:16995Re-query CCDS DB by CCDS ID:27129.1Re-query CCDS DB by GeneID:16995See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27129.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057569.3 ENSMUSP00000051368.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057569.3Link to Ensembl Protein Viewer:ENSMUSP00000051368.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000057569Re-query CCDS DB by Protein ID:ENSMUSP00000051368
Original member NCBI NM_008519.2 NP_032545.1 Updated not alive Link to Nucleotide Sequence:NM_008519.2Link to Protein Sequence:NP_032545.1Re-query CCDS DB by Nucleotide ID:NM_008519Re-query CCDS DB by Protein ID:NP_032545
Current member NCBI NM_008519.3 NP_032545.1 Accepted alive Link to Nucleotide Sequence:NM_008519.3Link to Protein Sequence:NP_032545.1Re-query CCDS DB by Nucleotide ID:NM_008519Re-query CCDS DB by Protein ID:NP_032545Link to BLAST:NP_032545.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032545.1 351 O88855 351 100% 0 0

Chromosomal Locations for CCDS 27129.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 55767242 55768297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1056 nt):
ATGGCTGCAAACACTACATCTCCTGCAGCACCTTCTTCTCCTGGTGGCATGTCCCTGTCTCTGTTGCCCA
TTGTTCTACTGTCTGTGGCCCTGGCTGTGGGGCTTCCTGGCAATAGCTTTGTAGTGTGGAGCATCCTGAA
AAGGATGCAGAAACGCACGGTCACCGCCCTGCTGGTGCTGAACTTGGCCCTGGCCGACTTGGCTGTGTTG
CTCACTGCTCCCTTTTTCCTCCACTTTCTGGCTCGAGGCACCTGGAGTTTTAGAGAGATGGGTTGCCGCC
TGTGCCACTATGTCTGTGGAATAAGCATGTATGCCAGTGTCCTGCTTATAACCATCATGAGTCTGGACCG
ATCACTGGCAGTGGCCCGCCCCTTTATGTCCCAAAAGGTTCGTACTAAGGCCTTTGCCCGATGGGTGCTG
GCAGGCATCTGGGTGGTGTCTTTTCTGCTGGCCATACCGGTCCTTGTGTACCGTACAGTAAAATGGAACA
ACAGGACTCTGATCTGCGCTCCGAACTATCCCAACAAAGAGCATAAAGTCTTCCATCTGCTCTTCGAAGC
CATCACGGGCTTCCTGCTGCCCTTCCTAGCGGTGGTGGCCAGCTACTCTGACATCGGGCGCAGGCTGCAG
GCTCGGCGCTTCCGCCGTAGTCGCCGCACCGGCCGCCTGGTGGTGCTCATTATCCTGGCCTTCGCCGCCT
TCTGGCTGCCTTACCACCTGGTGAACCTGGTGGAAGCCGGCCGCACAGTGGCCGGCTGGGACAAGAACAG
CCCTGCGGGGCAGCGTCTGAGGCTGGCCCGCTATGTGCTCATCGCGCTGGCCTTCCTGAGCAGCAGCGTG
AACCCGGTGCTGTACGCGTGCGCGGGCGGCGGCCTGCTGCGTTCGGCGGGCGTGGGCTTCGTGGTCAAGC
TACTGGAGGGCACTGGCTCGGAGGTGTCCAGCACCCGCCGCGGGGGCACTCTGGTCCAGACCCCGAAGGA
CACACCTGCCTGTCCTGAGCCTGGCCCCACCGACAGCTTCATGACTTCCTCCACCATTCCTGAGTCTTCG
AAGTGA

Translation (351 aa):
MAANTTSPAAPSSPGGMSLSLLPIVLLSVALAVGLPGNSFVVWSILKRMQKRTVTALLVLNLALADLAVL
LTAPFFLHFLARGTWSFREMGCRLCHYVCGISMYASVLLITIMSLDRSLAVARPFMSQKVRTKAFARWVL
AGIWVVSFLLAIPVLVYRTVKWNNRTLICAPNYPNKEHKVFHLLFEAITGFLLPFLAVVASYSDIGRRLQ
ARRFRRSRRTGRLVVLIILAFAAFWLPYHLVNLVEAGRTVAGWDKNSPAGQRLRLARYVLIALAFLSSSV
NPVLYACAGGGLLRSAGVGFVVKLLEGTGSEVSSTRRGGTLVQTPKDTPACPEPGPTDSFMTSSTIPESS
K


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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