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Report for CCDS2727.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2727.1 Public Homo sapiens 3 CDCP1 24 110 108 CCDS HistoryNCBI Gene:64866Re-query CCDS DB by CCDS ID:2727.1Re-query CCDS DB by GeneID:64866See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2727.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296129.6 ENSP00000296129.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296129.6Link to Ensembl Protein Viewer:ENSP00000296129.1Re-query CCDS DB by Nucleotide ID:ENST00000296129Re-query CCDS DB by Protein ID:ENSP00000296129
Original member Current member NCBI NM_022842.5 NP_073753.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022842.5Link to Protein Sequence:NP_073753.3Re-query CCDS DB by Nucleotide ID:NM_022842Re-query CCDS DB by Protein ID:NP_073753Link to BLAST:NP_073753.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_073753.3 836 Q9H5V8-1 836 100% 0 0

Chromosomal Locations for CCDS 2727.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 45085638 45086067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45089054 45089141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45091173 45091538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45093277 45093657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45095347 45095568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45110473 45110841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45112083 45112445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45118412 45118621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45146206 45146287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2511 nt):
ATGGCCGGCCTGAACTGCGGGGTCTCTATCGCACTGCTAGGGGTTCTGCTGCTGGGTGCGGCGCGCCTGC
CGCGCGGGGCAGAAGCTTTTGAGATTGCTCTGCCACGAGAAAGCAACATTACAGTTCTCATAAAGCTGGG
GACCCCGACTCTGCTGGCAAAACCCTGTTACATCGTCATTTCTAAAAGACATATAACCATGTTGTCCATC
AAGTCTGGAGAAAGAATAGTCTTTACCTTTAGCTGCCAGAGTCCTGAGAATCACTTTGTCATAGAGATCC
AGAAAAATATTGACTGTATGTCAGGCCCATGTCCTTTTGGGGAGGTTCAGCTTCAGCCCTCGACATCGTT
GTTGCCTACCCTCAACAGAACTTTCATCTGGGATGTCAAAGCTCATAAGAGCATCGGTTTAGAGCTGCAG
TTTTCCATCCCTCGCCTGAGGCAGATCGGTCCGGGTGAGAGCTGCCCAGACGGAGTCACTCACTCCATCA
GCGGCCGAATCGATGCCACCGTGGTCAGGATCGGAACCTTCTGCAGCAATGGCACTGTGTCCCGGATCAA
GATGCAAGAAGGAGTGAAAATGGCCTTACACCTCCCATGGTTCCACCCCAGAAATGTCTCCGGCTTCAGC
ATTGCAAACCGCTCATCTATAAAACGTCTGTGCATCATCGAGTCTGTGTTTGAGGGTGAAGGCTCAGCAA
CCCTGATGTCTGCCAACTACCCAGAAGGCTTCCCTGAGGATGAGCTCATGACGTGGCAGTTTGTCGTTCC
TGCACACCTGCGGGCCAGCGTCTCCTTCCTCAACTTCAACCTCTCCAACTGTGAGAGGAAGGAGGAGCGG
GTTGAATACTACATCCCGGGCTCCACCACCAACCCCGAGGTGTTCAAGCTGGAGGACAAGCAGCCTGGGA
ACATGGCGGGGAACTTCAACCTCTCTCTGCAAGGCTGTGACCAAGATGCCCAAAGTCCAGGGATCCTCCG
GCTGCAGTTCCAAGTTTTGGTCCAACATCCACAAAATGAAAGCAATAAAATCTACGTGGTTGACTTGAGT
AATGAGCGAGCCATGTCACTCACCATCGAGCCACGGCCCGTCAAACAGAGCCGCAAGTTTGTCCCTGGCT
GTTTCGTGTGTCTAGAATCTCGGACCTGCAGTAGCAACCTCACCCTGACATCTGGCTCCAAACACAAAAT
CTCCTTCCTTTGTGATGATCTGACACGTCTGTGGATGAATGTGGAAAAAACCATAAGCTGCACAGACCAC
CGGTACTGCCAAAGGAAATCCTACTCACTCCAGGTGCCCAGTGACATCCTCCACCTGCCTGTGGAGCTGC
ATGACTTCTCCTGGAAGCTGCTGGTGCCCAAGGACAGGCTCAGCCTGGTGCTGGTGCCAGCCCAGAAGCT
GCAGCAGCATACACACGAGAAGCCCTGCAACACCAGCTTCAGCTACCTCGTGGCCAGTGCCATACCCAGC
CAGGACCTGTACTTCGGCTCCTTCTGCCCGGGAGGCTCTATCAAGCAGATCCAGGTGAAGCAGAACATCT
CGGTGACCCTTCGCACCTTTGCCCCCAGCTTCCAACAAGAGGCCTCCAGGCAGGGTCTGACGGTGTCCTT
TATACCTTATTTCAAAGAGGAAGGCGTTTTCACGGTGACCCCTGACACAAAAAGCAAGGTCTACCTGAGG
ACCCCCAACTGGGACCGGGGCCTGCCATCCCTCACCTCTGTGTCCTGGAACATCAGCGTGCCCAGAGACC
AGGTGGCCTGCCTGACTTTCTTTAAGGAGCGGAGCGGCGTGGTCTGCCAGACAGGGCGCGCATTCATGAT
CATCCAGGAGCAGCGGACCCGGGCTGAGGAGATCTTCAGCCTGGACGAGGATGTGCTCCCCAAGCCAAGC
TTCCACCATCACAGCTTCTGGGTCAACATCTCTAACTGCAGCCCCACGAGCGGCAAGCAGCTAGACCTGC
TCTTCTCGGTGACACTTACCCCAAGGACTGTGGACTTGACTGTCATCCTCATCGCAGCGGTGGGAGGTGG
AGTCTTACTGCTGTCTGCCCTCGGGCTCATCATTTGCTGTGTGAAAAAGAAGAAAAAGAAGACAAACAAG
GGCCCCGCTGTGGGTATCTACAATGACAACATCAATACTGAGATGCCGAGGCAGCCAAAAAAGTTTCAGA
AAGGGCGAAAGGACAATGACTCCCATGTGTATGCAGTCATCGAGGACACCATGGTATATGGGCATCTGCT
ACAGGATTCCAGCGGCTCCTTCCTGCAGCCAGAGGTGGACACCTACCGGCCGTTCCAGGGCACCATGGGG
GTCTGTCCTCCCTCCCCACCCACCATATGCTCCAGGGCCCCAACTGCAAAGTTGGCCACTGAGGAGCCAC
CTCCTCGCTCCCCTCCTGAGTCTGAGAGTGAACCGTACACCTTCTCCCATCCCAACAATGGGGATGTAAG
CAGCAAGGACACAGACATTCCCTTACTGAACACTCAGGAGCCCATGGAGCCAGCAGAATAA

Translation (836 aa):
MAGLNCGVSIALLGVLLLGAARLPRGAEAFEIALPRESNITVLIKLGTPTLLAKPCYIVISKRHITMLSI
KSGERIVFTFSCQSPENHFVIEIQKNIDCMSGPCPFGEVQLQPSTSLLPTLNRTFIWDVKAHKSIGLELQ
FSIPRLRQIGPGESCPDGVTHSISGRIDATVVRIGTFCSNGTVSRIKMQEGVKMALHLPWFHPRNVSGFS
IANRSSIKRLCIIESVFEGEGSATLMSANYPEGFPEDELMTWQFVVPAHLRASVSFLNFNLSNCERKEER
VEYYIPGSTTNPEVFKLEDKQPGNMAGNFNLSLQGCDQDAQSPGILRLQFQVLVQHPQNESNKIYVVDLS
NERAMSLTIEPRPVKQSRKFVPGCFVCLESRTCSSNLTLTSGSKHKISFLCDDLTRLWMNVEKTISCTDH
RYCQRKSYSLQVPSDILHLPVELHDFSWKLLVPKDRLSLVLVPAQKLQQHTHEKPCNTSFSYLVASAIPS
QDLYFGSFCPGGSIKQIQVKQNISVTLRTFAPSFQQEASRQGLTVSFIPYFKEEGVFTVTPDTKSKVYLR
TPNWDRGLPSLTSVSWNISVPRDQVACLTFFKERSGVVCQTGRAFMIIQEQRTRAEEIFSLDEDVLPKPS
FHHHSFWVNISNCSPTSGKQLDLLFSVTLTPRTVDLTVILIAAVGGGVLLLSALGLIICCVKKKKKKTNK
GPAVGIYNDNINTEMPRQPKKFQKGRKDNDSHVYAVIEDTMVYGHLLQDSSGSFLQPEVDTYRPFQGTMG
VCPPSPPTICSRAPTAKLATEEPPPRSPPESESEPYTFSHPNNGDVSSKDTDIPLLNTQEPMEPAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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