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Report for CCDS27278.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27278.1 Public Mus musculus 14 Zc3h13 23 108 98 CCDS HistoryNCBI Gene:67302Re-query CCDS DB by CCDS ID:27278.1Re-query CCDS DB by GeneID:67302See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27278.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022577.5 ENSMUSP00000022577.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022577.5Link to Ensembl Protein Viewer:ENSMUSP00000022577.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000022577Re-query CCDS DB by Protein ID:ENSMUSP00000022577
Original member Current member NCBI NM_026083.2 NP_080359.2 Accepted alive Link to Nucleotide Sequence:NM_026083.2Link to Protein Sequence:NP_080359.2Re-query CCDS DB by Nucleotide ID:NM_026083Re-query CCDS DB by Protein ID:NP_080359Link to BLAST:NP_080359.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080359.2 1729 E9Q784 1729 100% 0 0

Chromosomal Locations for CCDS 27278.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 75291578 75291694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75292178 75292287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75293891 75294002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75305789 75305897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75308909 75309048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75309645 75309802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75315881 75316078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75321597 75321904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75323224 75323874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75324413 75324604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75327544 75328144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75329674 75329777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75330069 75331259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75331706 75332218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75335925 75336074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75337370 75337570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75339309 75339472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75343594 75343764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5190 nt):
ATGTCAAAAATTAGGAGAAAGGTCACAGTGGAAAACACCAAGACCATATCTGAGAGTACATCCCGAAGAC
CTAGCGTATTTGAGAGGCTTGGCCCCAGCACTGGAAGCACAACAGAGACACAGTGTCGTAACTGGCTGAA
GACTGGCAGCTGCCTCTATGGAAACACATGTAGGTTCATACATGGCCCTTCACCTCGTGGGAAAGGCTAC
AGCAGCAATTACAGAAGGTCACCAGAAAGACCCACAGGTGACCTCAGAGAAAGAATGAAGAATAAGCGTC
AGGATGTGGATTCTGAATCCCAGAAACGGAATACAGAGGAGCCATCCTCACCTGTTAGGAAAGAATCTTC
AAGAGGGAGACATAGAGACAAGGAAGACATAAAAATTGTTAAGGAGAGAACTCCAGAAAGTGAAGAAGAA
AATGTAGAATGGGAAACTAACAGAGATGATTCTGACAATGGAGATATTAATTATGATTATGTTCATGAGT
TATCATTGGAAATGAAGCGGCAGAAAATACAGAGAGAATTGATGAAATTGGAACAAGAAAATATGGATAA
GAGAGAAGAAATTATCATTCAAAAGGAGGTTTCCCCAGAAGTGGTTAGATCAAAATTGTCTCCATCACCT
TCTCTGAGAAAGTCCAGTAAATCTCCAAAACGAAAGTCCAGCCCCAAGGCATCTTCAGCTGGCAAGAAGG
AGCGGAAGGCTGCTGTGGTGGCTTCTCCGCTGTTGGACCAGCAGAGAAATTCAAAGGGCAACCAAAGTAA
AAAGAAAGGGCCGCGCACTCCGAGTCCACCTCCTCCTATACTAGAAGATATCATTCTGGGGAAAAAGTAC
AAAGAAAAGTATAAAGTGAAAGACAGGATAGAAGAAAAACCAAGAGATGGGAAGGACAGAGGCCGGGATT
TTGAAAAGCAAAGAGAAAAACGAGACAAGCCAAGGTCTTCTTCTCCGGGACAGCACCATTCTCCTCTGTC
TTCTAGACATCACTCGTCATCCTCACAGTCAGGGTCATCTATTCAGAGACACTCTCCTTCTCCTCGCCGG
AAGAGAACTCCTTCCCCATCCTACCAGAGGACTTTAACTCCATCTTTACGACGTTCTGCCTCTCCTTATC
CAACCCACTGTCTGTCTTCTCCTCAGAGAAAGCAAAGTCCTCCAAGACATCGCTCTCCAATGCGAGAGAA
AGGGAGGCATGATCACGAACGGACTTCACAGTCACATGACCGGCGTCACGAAAGGAGGGAAGAAACTCGA
GGCAAAAGGGATAGAGAAAAGGATACCAGAGAAGAGCGAGAGTCTGAACATGACCACAGGGATGACAGAG
AACCACGAGACAGCCGGGACCGGAGAGACACTAGAGACCGCAGGGAACTTAGAGACTCCAGAGACATGCG
GGACTCCAGAGAGATGAGGGATTATAGCAGAGATGCCAAGGAGAGCCGCGATCCCAGAGACTCCCGGTCA
GCTCGGGATGTCCATGACTACAGGGACCGTGAAGCTCGGGATGCTCATGCTCGAGATGTTCGAGATGCTA
GGGATGCTCGGGATGCTAGGGATGCTCGGGATATTCGGGATGTCCGTGATGTCCGGGATGTCCGGGATGT
CCGGGATGTCCGGGATGTGCGAGATGTGCGTGATGTCCGAGATGTTCGAGATGCTCGCGATGTCCGGGAT
GTCCGGGATGCTCGCGATGTCCGGGATGTCCGGGATGTTCGGGATGGTCATCGAAAGGAGGATGTATACC
AGGAAGAAGCCCGCAGTTATGGCAGAAACCACCTGAGAGAAGAGAGTTCTAGAGTTGAACTAAGGAATGA
CTCTAGAAATGAGTCTCGAAGTGAAATTAGAAACGATCGGATGGGCAGAAGTAGGGGGAGAGGTCCAGAA
CTGCCTGAAAAGGGAAGTCGAGGAACAAGAGGTTCCCAAATGGATAGCCACAGTAGTGGCAGCAACTACC
ATGACAGCTGGGAAACTCGCAGTAGCTATCCTGAAAGAGACAGATACCCTGAGAGAGACACTCGGGATCC
GGCCAGGGATTCTTCCTTTGAGAGAAGGCATGGAGAAAGAGACCGTCGGGATAACAGGGAACGAGATCAA
AGACCAAGCTCACCTATTCGCCATCAGGGAAGGAGTGAGGAGCTTGAGCGAGATGAAAGAAGAGAGGAAC
GAAGAATAGACAGAGTGGATGAGAGACGAGACGATAGGGTCAGGGACAGAGATAGGGATCGAGAGCGAGA
AAGGGAGCGGGAGAGGGAACGAGAGCGGGAGCGAGAAAAGGAAAGAGAAAGAGAACTAGAAAGAGAGAGA
GCTAGAGAGCGGGAAAGAGAGAGAGAGAAAGAGAGGGAGAGGGAGCGAGAACGAGAGAGAGATCAGCGAG
ATCGTGACCATGATCGAGAGCGAGAAAGAGAGAGGGAGCGAGAGAGGGAAAAAGAACGGGAGCGAGAGCG
AGAAGAGAGAGAGAGGGAGAGAGAAAGGGAAAGGGAACGGGAGAGAGAGAGGGAACGGGAGCGGGAGAGA
GAGCGAGAACGGGAGCGGGAGCGAGAGAGGGCCAGAGAAAGAGAAAAAGAACGAGAACGGCAAAGAGAGT
GGGAAGATAAAGACAAGGGACGCGATGACCGGAGGGAGAAGCGCGAGGATATTCATGTTCGAGAGGACAG
GATCCCCAGAGACAGCCACGAGGAGAGGAAGTCCAAGAAACGCTATAGAAATGAAGGGAGTCCCAGCCCC
CGGCAGTCCCCCAAGCGCCGGCGGGAGCATTCTCCTGACAGTGACACCTACCACAGTGGGGATGACAAAA
ATGAAAAACATAGACTCTTGAGCCAGGTTGTACGGCCACAGGAATCTCGTTCTCTCAGCCCATCCCACCT
CACAGAAGATAGGCAAGGTAGATGGAAAGAAGAGGATCGTAAATCAGAAAGAAAGGAGAGTTCCAGGCGC
TACGAAGAGCAAGAACTCAAAGAGAAGCTTTCTTGTGGCGACAGGCAAAGGGAGCAGGCCGAAAGCGTGG
ACAGCTCGAGAGTGCGCGCCCAAGACCTCCTCAGCCATCGCCAGGCTGAAGACCGCGACCGTGACGGGTC
TGATCGAGCCCATGATGAAAAGAAAAAAGCAAAAGCTCCGAAGAAACCTGTAAAGAAAAAGAAGGAGGAG
GATGTTGGAGTAGAGAGGGGCAACCTTGAGACACATGAGGATAGTCAGGTATTTTCACCAAAAAAAGGAC
AGAAGAAGAAAAACATTGAAAAAAAGCGTAAAAGATCCAAGGGTGATTCTGATGTTTCTGATGAGGAGGC
AGCCCCGCAGAATAAGAAGAAGAGAGGGCCTCGCACACCCCCTCTGGCCATCAAGGAGGAGCTGGCTGAC
ATCTCCACTGACAAGGATGGCGTCCTGGAGGATCCACTGAAGAAAGAAAATACAGCCTTTAGTGACTGGT
CTGATGAGGATGTGCCTGACCGCACAGAGGGGCTGGAAGCCGAGCACACCGCAGCCACTGCCACTCCTGG
TAGCACCCCTTCCCCCCTGTCTTCTCTTCTCCCTCCTCCACCCCCTGTGGCTGCTGCCAGTACTGCAGCC
ACTGCTCTTGCCTCCTCAGCTGTTTCTGCTACCACCTCTGCCACCTCTTCAAGCTCTGCTGCCACCTCCA
ATACCAATGGCAGTGAAGACTCACATAGAAAGTGCCACAGGGCACGAGGGGAGAAGGTAGAGGTGTCCCA
TGTGACCCTAGAAGACACACCACATCGCAAGCTGGTGGATCAAAAAAGAAGCAGCAGCCTCGGAAGCAAT
CGAAGTCACCGCAGCCACACCTCTGGTCGCCTACGCTCCCCATCTAATGATTCTGCTCATCGAAGTGGGG
ATGACCAGGGTAGTCGGAAGAGAGTGCTCCATAGTGGCTCCAGGGATAGAGAGAAAACAAAAAGCCTAGA
AATCACAGGAGAAAGAAAATCTAGGATTGATCAGTTAAAGCGTGGAGAACCCAGTCGAAGTACTTCTTCA
GATCGCCAGGATTCCAGAAGCCATAGCTCAAGAAGAAGCTCTCCTGAGTCGGATCGGCAGGTTCACTCAA
GGTCCGGGTCGTTTGACAGTAGAGACCGACTTCAAGAACGAGATAGGTATGAGCATGACAGAGAGCGGGA
GAGGGACCGGAGAGATCCCAGACAGCGGGAATGGGATCGTGAAGCGGAGAAAGAGTGGCCTCGGACCAGA
GACCGAGACAGGCTTCGGGAACGAGACAGAGACCGGGACAGAAGGAGAGACTTGGACAGAGAAAGAGAGA
GACTGATCTCTGACCCCATGGAAAGGGACAGAGAACGAGAGAGAACTTTTGAGACATCTCAGCTGGAATC
TGGGAAACGAAGCGAAGTCAAATTAGAGAGTGAACATGAGAGAGATCTGGAAGGCAGCTCCCGGGACTCC
GTGGCCTTGGACAAAGAAAGGATGGACAGAGACCTGGGCTCTGTGCAGGGATTTGAAGATGTGAGTAAAG
CTGAGAGAACAGAGAGTCTTGAAGGAGATGATGAATCCAAGTTAGATGATGCACATTCATTAGGATCTGG
TGCTGGGGAAGGATATGAGCCCATCAGTGATGACGAGCTAGATGAAATTCTGGCAGGGGATGCAGAAAAG
AGAGAGGACCAGCAGGAAGAAGAGAAGATGCCAGATCCATTAGATGTAATAGATGTGGACTGGTCTGGAC
TAATGCCAAAGCACCCGAAAGAACCGAGAGAGCCTGGGGCTGCACTCTTAAAGTTCACGCCTGGAGCTGT
TCTGCTACGAGTTGGGATTTCTAAAAAGTTGGCTGGTTCTGAGCTCTTTACCAAAGTTAAAGAAACATGT
CAACAACTTGTAGAAAAACCCAAAGATGCAGACAGCCTTTTCGAACATGAACTAGGGGCTCTCAACATGG
CTGCTTTACTTCGAAAAGAAGAGCGAGCAAGTCTTCTTAGTGACCTGGGACCATGTTGTAAAGCATTATG
TTTCAGACGGGACTCTGCAATCCGGAAGCAGCTTGTGAAGAACGAAAAGGGAACTGTGAAGCAGGCGTAC
ACAAACACTCCGATGGTAGACAATGAGCTGCTTCGGCTAAGTCTTCGGTTATTTAAGAAGAAGGCCACCT
GCCATGCCCCTGGACAGGAAAAGACTGAAGATGGCAAATTAGGACCGTGCAGTATCCAGCAGGAGCTGTG
TGTGTCCTAG

Translation (1729 aa):
MSKIRRKVTVENTKTISESTSRRPSVFERLGPSTGSTTETQCRNWLKTGSCLYGNTCRFIHGPSPRGKGY
SSNYRRSPERPTGDLRERMKNKRQDVDSESQKRNTEEPSSPVRKESSRGRHRDKEDIKIVKERTPESEEE
NVEWETNRDDSDNGDINYDYVHELSLEMKRQKIQRELMKLEQENMDKREEIIIQKEVSPEVVRSKLSPSP
SLRKSSKSPKRKSSPKASSAGKKERKAAVVASPLLDQQRNSKGNQSKKKGPRTPSPPPPILEDIILGKKY
KEKYKVKDRIEEKPRDGKDRGRDFEKQREKRDKPRSSSPGQHHSPLSSRHHSSSSQSGSSIQRHSPSPRR
KRTPSPSYQRTLTPSLRRSASPYPTHCLSSPQRKQSPPRHRSPMREKGRHDHERTSQSHDRRHERREETR
GKRDREKDTREERESEHDHRDDREPRDSRDRRDTRDRRELRDSRDMRDSREMRDYSRDAKESRDPRDSRS
ARDVHDYRDREARDAHARDVRDARDARDARDARDIRDVRDVRDVRDVRDVRDVRDVRDVRDVRDARDVRD
VRDARDVRDVRDVRDGHRKEDVYQEEARSYGRNHLREESSRVELRNDSRNESRSEIRNDRMGRSRGRGPE
LPEKGSRGTRGSQMDSHSSGSNYHDSWETRSSYPERDRYPERDTRDPARDSSFERRHGERDRRDNRERDQ
RPSSPIRHQGRSEELERDERREERRIDRVDERRDDRVRDRDRDREREREREREREREREKERERELERER
AREREREREKERERERERERDQRDRDHDREREREREREREKEREREREERERERERERERERERERERER
ERERERERERAREREKERERQREWEDKDKGRDDRREKREDIHVREDRIPRDSHEERKSKKRYRNEGSPSP
RQSPKRRREHSPDSDTYHSGDDKNEKHRLLSQVVRPQESRSLSPSHLTEDRQGRWKEEDRKSERKESSRR
YEEQELKEKLSCGDRQREQAESVDSSRVRAQDLLSHRQAEDRDRDGSDRAHDEKKKAKAPKKPVKKKKEE
DVGVERGNLETHEDSQVFSPKKGQKKKNIEKKRKRSKGDSDVSDEEAAPQNKKKRGPRTPPLAIKEELAD
ISTDKDGVLEDPLKKENTAFSDWSDEDVPDRTEGLEAEHTAATATPGSTPSPLSSLLPPPPPVAAASTAA
TALASSAVSATTSATSSSSAATSNTNGSEDSHRKCHRARGEKVEVSHVTLEDTPHRKLVDQKRSSSLGSN
RSHRSHTSGRLRSPSNDSAHRSGDDQGSRKRVLHSGSRDREKTKSLEITGERKSRIDQLKRGEPSRSTSS
DRQDSRSHSSRRSSPESDRQVHSRSGSFDSRDRLQERDRYEHDRERERDRRDPRQREWDREAEKEWPRTR
DRDRLRERDRDRDRRRDLDRERERLISDPMERDRERERTFETSQLESGKRSEVKLESEHERDLEGSSRDS
VALDKERMDRDLGSVQGFEDVSKAERTESLEGDDESKLDDAHSLGSGAGEGYEPISDDELDEILAGDAEK
REDQQEEEKMPDPLDVIDVDWSGLMPKHPKEPREPGAALLKFTPGAVLLRVGISKKLAGSELFTKVKETC
QQLVEKPKDADSLFEHELGALNMAALLRKEERASLLSDLGPCCKALCFRRDSAIRKQLVKNEKGTVKQAY
TNTPMVDNELLRLSLRLFKKKATCHAPGQEKTEDGKLGPCSIQQELCVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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