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Report for CCDS2741.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2741.1 Public Homo sapiens 3 LRRC2 24 110 108 CCDS HistoryNCBI Gene:79442Re-query CCDS DB by CCDS ID:2741.1Re-query CCDS DB by GeneID:79442See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2741.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296144.3 ENSP00000296144.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000296144.3Link to Ensembl Protein Viewer:ENSP00000296144.3Re-query CCDS DB by Nucleotide ID:ENST00000296144Re-query CCDS DB by Protein ID:ENSP00000296144
Original member Current member EBI ENST00000395905.8 ENSP00000379241.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000395905.8Link to Ensembl Protein Viewer:ENSP00000379241.3Re-query CCDS DB by Nucleotide ID:ENST00000395905Re-query CCDS DB by Protein ID:ENSP00000379241
Original member Current member EBI ENST00000682605.1 ENSP00000507018.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000682605.1Link to Ensembl Protein Viewer:ENSP00000507018.1Re-query CCDS DB by Nucleotide ID:ENST00000682605Re-query CCDS DB by Protein ID:ENSP00000507018
Original member Current member NCBI NM_024512.5 NP_078788.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024512.5Link to Protein Sequence:NP_078788.2Re-query CCDS DB by Nucleotide ID:NM_024512Re-query CCDS DB by Protein ID:NP_078788Link to BLAST:NP_078788.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078788.2 371 Q9BYS8 371 100% 0 0

Chromosomal Locations for CCDS 2741.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 46519014 46519063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46521522 46521658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46527426 46527581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46529905 46530050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46532773 46532909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46539045 46539201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46545046 46545253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46551467 46551591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1116 nt):
ATGGGACATAAAGTGGTTGTCTTCGACATTTCTGTCATCAGAGCCTTGTGGGAAACTCGTGTCAAGAAGC
ACAAAGCTTGGCAGAAGAAGGAGGTGGAAAGGCTTGAGAAGAGCGCCTTGGAGAAGATAAAGGAGGAGTG
GAACTTTGTGGCCGAATGCAGGAGGAAGGGCATCCCCCAGGCTGTATACTGCAAGAATGGCTTCATAGAC
ACCAGCGTGCGGCTTCTGGACAAGATTGAAAGGAACACTCTCACAAGGCAGAGTTCACTTCCCAAGGACA
GAGGCAAACGGAGCAGTGCGTTTGTGTTTGAACTTTCTGGGGAGCACTGGACGGAGCTCCCAGATTCATT
GAAGGAGCAGACACACCTGAGAGAATGGTACATAAGCAATACCTTGATTCAAATCATTCCTACATATATT
CAGTTATTTCAAGCGATGAGAATTCTGGATCTGCCAAAAAACCAAATCTCACATCTTCCAGCAGAAATCG
GTTGTTTGAAGAACCTGAAAGAACTCAATGTGGGTTTCAACTATCTGAAGAGCATTCCTCCAGAATTGGG
AGATTGTGAAAATCTAGAGAGACTGGATTGTTCTGGAAATCTAGAATTAATGGAGCTGCCCTTTGAATTA
AGTAATTTGAAGCAAGTTACATTTGTAGATATCTCAGCAAACAAGTTTTCCAGTGTCCCAATCTGTGTCC
TGCGGATGTCGAATTTGCAGTGGTTGGATATCAGCAGCAATAACCTGACCGACCTGCCGCAAGATATAGA
CAGGCTAGAGGAGCTGCAGAGCTTTCTCTTGTATAAAAACAAGTTGACCTACCTTCCCTATTCCATGCTG
AACCTGAAGAAGCTCACTCTGTTAGTCGTCAGTGGGGACCATTTGGTGGAGCTCCCAACTGCCCTTTGTG
ACTCATCCACACCTTTAAAATTTGTAAGCCTTATGGACAATCCTATTGATAATGCCCAATGTGAAGATGG
CAATGAAATAATGGAAAGTGAACGGGATCGCCAACATTTTGATAAAGAAGTTATGAAAGCCTATATTGAA
GACCTTAAAGAAAGAGAATCTGTTCCCAGCTATACCACCAAAGTGTCTTTTAGCCTTCAACTTTGA

Translation (371 aa):
MGHKVVVFDISVIRALWETRVKKHKAWQKKEVERLEKSALEKIKEEWNFVAECRRKGIPQAVYCKNGFID
TSVRLLDKIERNTLTRQSSLPKDRGKRSSAFVFELSGEHWTELPDSLKEQTHLREWYISNTLIQIIPTYI
QLFQAMRILDLPKNQISHLPAEIGCLKNLKELNVGFNYLKSIPPELGDCENLERLDCSGNLELMELPFEL
SNLKQVTFVDISANKFSSVPICVLRMSNLQWLDISSNNLTDLPQDIDRLEELQSFLLYKNKLTYLPYSML
NLKKLTLLVVSGDHLVELPTALCDSSTPLKFVSLMDNPIDNAQCEDGNEIMESERDRQHFDKEVMKAYIE
DLKERESVPSYTTKVSFSLQL


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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