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Report for CCDS2743.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2743.1 Public Homo sapiens 3 ALS2CL 24 110 108 CCDS HistoryNCBI Gene:259173Re-query CCDS DB by CCDS ID:2743.1Re-query CCDS DB by GeneID:259173See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2743.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000318962.9 ENSP00000313670.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000318962.9Link to Ensembl Protein Viewer:ENSP00000313670.4Re-query CCDS DB by Nucleotide ID:ENST00000318962Re-query CCDS DB by Protein ID:ENSP00000313670
Original member Current member EBI ENST00000415953.5 ENSP00000413223.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000415953.5Link to Ensembl Protein Viewer:ENSP00000413223.1Re-query CCDS DB by Nucleotide ID:ENST00000415953Re-query CCDS DB by Protein ID:ENSP00000413223
Original member Current member NCBI NM_001190707.2 NP_001177636.1 Accepted alive Link to Nucleotide Sequence:NM_001190707.2Link to Protein Sequence:NP_001177636.1Re-query CCDS DB by Nucleotide ID:NM_001190707Re-query CCDS DB by Protein ID:NP_001177636Link to BLAST:NP_001177636.1
Original member Current member NCBI NM_147129.5 NP_667340.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_147129.5Link to Protein Sequence:NP_667340.2Re-query CCDS DB by Nucleotide ID:NM_147129Re-query CCDS DB by Protein ID:NP_667340Link to BLAST:NP_667340.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177636.1 953 Q60I27-1 953 100% 0 0
NP_667340.2 953 Q60I27-1 953 100% 0 0

Chromosomal Locations for CCDS 2743.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 46670984 46671064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46671488 46671584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46671884 46672033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46672140 46672201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46673339 46673381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46674566 46674739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46675618 46675686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46676245 46676402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46676642 46676738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46676849 46677022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46678259 46678389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46679210 46679287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46680430 46680541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46681246 46681407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46681500 46681598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46682029 46682094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46683130 46683326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46683782 46683848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46683989 46684047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46685525 46685644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46686308 46686439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46686983 46687148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46687619 46687684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46688098 46688296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46689338 46689440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2862 nt):
ATGTGCAACCCTGAGGAGGCAGCTCTGCTGCGGCTGGAGGAGGTCTTCTCAGCCACCCTCGCCCATGTCA
AC
AGCCTTGTCCTCCAGCCCCTGCTCCCAGCCGCCCCAGATCCCTCGGATCCCTGGGGCAGAGAGTGCCT
G
CGGCTCTTGCAACAGCTGCACAAGAGCTCCCAGCAACTCTGGGAGGTGACGGAGGAAAGCCTGCACTCA
CTG
CAGGAGAGGCTGCGTTACCCGGACTCCACCGGTCTGGAGTCCCTGCTGCTGCTGCGAGGTGCTGACC
GT
GTACTGCAGGCCCACATAGAGTACATTGAGTCCTACACAAGCTGCATGGTGGTGCAGGCCTTCCAGAA
G
GCAGCAAAGAGGAGAAGCGAGTACTGGCGGGGCCAGCGGAAGGCGCTGCGGCAGCTGCTTTCAGGTGTG
AGC
TCAGAGGGCTCGGTGGGCGCATCGCTGGGCCAGGCCCTCCACCAGCCACTCGCCCATCACGTGCAAC
AG
TACGTGCTCCTCCTGCTGAGCCTCGGGGACACCATTGGGGAGCATCACCCAACCCGGGAGCTGGTGGT
G
AACGCAGTCACCCTCTTTGGGAACCTGCAGTCCTTCATGAAGCAGGAGTTGGACCAGGCTGTGGCCACA
CAG
GCTCTCTGGCACACCCTGAGAGGCCGGCTGAGGGATGTGCTCTGCACCCCTGCTCACAGACTCCTTC
AG
GACAGCCAGGACGTACCCGTGACGGTCGCACCGTTGCGGGCTGAGCGTGTGCTGCTCTTTGATGATGC
C
CTCGTCCTGCTGCAGGGCCACAATGTCCACACCTTTGATCTGAAGCTGGTGTGGGTGGATCCTGGGCAG
GAC
GGGTGCACGTTTCACCTCCTCACGCCCGAAGAAGAGTTCTCCTTTTGTGCCAAGGACTCCCAGGGCC
AG
GCAGTCTGGCAGTGGAAGGTGACCTGGGCTGTTCACCAGGCCCTGCATGGGAAGAAGGACTTCCCCGT
G
CTGGGGGCTGGCCTGGAGCCCTCCCAGCCTCCCGACTGCCGCTGCGCAGAATATACCTTCCAGGCAGAG
GGC
CGGCTCTGCCAGGCCACCTACGAGGGCGAGTGGTGCAGGGGCCGGCCCCACGGCAAGGGAACCCTGA
AA
TGGCCGGATGGGCGGAATCACGTGGGGAATTTCTGCCAGGGCCTGGAGCATGGCTTCGGCATCCGCCT
G
CTGCCCCAGGCCTCTGAGGACAAGTTCGACTGTTACAAGTGTCACTGGCGAGAAGGCAGCATGTGTGGC
TAC
GGCATCTGTGAGTACAGCACCGACGAGGTGTACAAGGGCTACTTCCAGGAGGGCCTGCGGCACGGAT
TT
GGGGTCCTTGAGAGTGGTCCGCAGGCCCCCCAGCCCTTCAGGTACACGGGCCACTGGGAGAGGGGCCA
G
AGGAGCGGCTATGGCATTGAGGAGGATGGTGACAGAGGTGAGCGCTACATTGGCATGTGGCAGGCTGGT
CAG
CGCCACGGCCCAGGGGTCATGGTCACCCAGGCAGGTGTCTGCTACCAGGGCACCTTCCAGGCGGACA
AG
ACGGTGGGCCCGGGCATCCTCCTCTCTGAAGACGACTCCCTGTATGAGGGCACCTTCACCAGGGACCT
G
ACCCTCATGGGGAAGGGCAAGGTCACCTTCCCCAATGGCTTCACCCTGGAGGGCTCGTTCGGCAGTGGG
GCA
GGGAGAGGACTGCACACACAGGGTGTGCTGGACACGGCTGCCCTCCCACCAGACCCGAGCAGTACCT
GC
AAGAGGCAGCTGGGCGTGGGTGCCTTCCCCGTGGAAAGCCGCTGGCAGGGAGTCTACAGCCCCTTCCG
G
GACTTTGTGTGTGCTGGCTGCCCCAGGGACCTGCAGGAGGCCCTGCTGGGCTTCGACGTGCAGAGCTCC
AGG
GAGCTGCGTAGGTCTCAGGATTACCTGTCCTGCGAGAGGACCCACCCTGAGGACAGTGTGGGCAGTA
TG
GAAGACATCCTGGAGGAGCTGCTGCAGCACCGGGAGCCCAAGGCCCTGCAGCTGTACCTCAGGAAGGC
T
CTGAGCAACTCACTGCACCCCCTGGGAAAGCTGCTCCGGACACTGATGCTGACCTTCCAGGCTACCTAC
GCA
GGTGTCGGGGCCAACAAGCACCTGCAGGAGCTGGCCCAGGAGGAGGTGAAGCAGCATGCCCAGGAAC
TC
TGGGCTGCCTACAGGGGTCTGCTGCGAGTTGCCTTAGAGCGCAAGGGCCAGGCCCTGGAGGAGGATGA
A
GACACAGAGACAAGGGACCTCCAGGTGCATGGATTGGTGCTGCCCCTCATGCTGCCCAGCTTCTACTCA
GAG
CTCTTCACGCTCTACCTGCTGCTTCATGAGCGGGAGGACAGCTTCTACAGCCAGGGCATTGCCAACT
TG
AGCCTCTTTCCTGATACCCAACTGCTCGAGTTCCTGGATGTGCAGAAGCACTTGTGGCCCCTCAAGGA
C
CTCACGCTGACGAGCAATCAGAGGTACTCCCTGGTCAGGGACAAGTGTTTCCTGTCAGCCACCGAGTGC
CTG
CAGAAGATCATGACCACGGTGGACCCACGGGAGAAGCTGGAGGTGCTGGAGAGGACATACGGGGAAA
TT
GAGGGCACGGTGTCGAGGGTATTGGGCCGGGAGTACAAGCTGCCCATGGACGACCTGCTGCCACTTCT
C
ATCTACGTGGTGTCGCGCGCCCGAATTCAGCACCTGGGAGCCGAGATCCACCTGATCCGTGACATGATG
GAC
CCCAACCACACAGGAGGCCTGTATGACTTCCTGCTCACAGCCCTGGAGTCCTGTTACGAGCACATCC
AG
AAAGAAGACATGAGGCTGCACCGCTTACCTGGCCACTGGCACTCCAGGGAGCTCTGGTAG


Translation (953 aa):
MCNPEEAALLRLEEVFSATLAHVNSLVLQPLLPAAPDPSDPWGRECLRLLQQLHKSSQQLWEVTEESLHS
L
QERLRYPDSTGLESLLLLRGADRVLQAHI
EYIESYTSCMVVQAFQKAAKRRSEYWRGQRKALRQLLSGV
S
SEGSVGASLGQALHQPLAHHVQQYVLLLLSLGDTIGE
HHPTRELVVNAVTLFGNLQSFMKQELDQAVAT
Q
ALWHTLRGRLR
DVLCTPAHRLLQDSQDVPVTVAPLRAERVLLFDDALVLLQGHNVHTFDLKLVWVDPGQ
D
GCTFHLLTPEEEFSFCAKDSQGQAVWQWKVTWAVHQALHGKKDFPVLGAGLEPSQPPDCRCAEYTFQAE
G
RLCQATYEGEWCRGRPHG
KGTLKWPDGRNHVGNFCQGLEHGFGIRLLPQASEDKFDCYKCHWREGSMCG
Y
GIC
EYSTDEVYKGYFQEGLRHGFGVLESGPQAPQPFRYTGHWERGQRSGYGIEEDGDRGERYIGMWQAG
Q
RHGPGVMVTQAGVCYQGTFQADKTV
GPGILLSEDDSLYEGTFTRDLTLMGKGKVTFPNGFTLEGSFGSG
A
GRGLHTQGVLDTAALPPDPSSTCK
RQLGVGAFPVESRWQGVYSPFRDFVCAGCPRDLQEALLGFDVQSS
R
ELRRSQDYLSCE
RTHPEDSVGSMEDILEELLQHREPKALQLYLRKALSNSLHPLGKLLRTLMLTFQATY
A
GVGANKHLQELAQEEVKQHAQELWAAY
RGLLRVALERKGQALEEDEDTETRDLQVHGLVLPLMLPSFYS
E
LFTLYLLLHEREDSFYSQGIANLSLFPDTQLLEFLDVQ
KHLWPLKDLTLTSNQRYSLVRDKCFLSATEC
L
QKI
MTTVDPREKLEVLERTYGEIEGTVSRVLGREYKLPMDDLLPLLIYVVSRARIQHLGAEIHLIRDMM
D
PNHTGGLYDFLLTALE
SCYEHIQKEDMRLHRLPGHWHSRELW



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser