NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27589.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27589.1 Public Mus musculus 15 Lrrc14 23 108 98 CCDS HistoryNCBI Gene:223664Re-query CCDS DB by CCDS ID:27589.1Re-query CCDS DB by GeneID:223664See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27589.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036423.14 ENSMUSP00000049466.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036423.14Link to Ensembl Protein Viewer:ENSMUSP00000049466.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000036423Re-query CCDS DB by Protein ID:ENSMUSP00000049466
Original member Current member EBI ENSMUST00000127208.7 ENSMUSP00000114921.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000127208.7Link to Ensembl Protein Viewer:ENSMUSP00000114921.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000127208Re-query CCDS DB by Protein ID:ENSMUSP00000114921
Original member Current member EBI ENSMUST00000155735.1 ENSMUSP00000115446.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000155735.1Link to Ensembl Protein Viewer:ENSMUSP00000115446.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000155735Re-query CCDS DB by Protein ID:ENSMUSP00000115446
Original member Current member EBI ENSMUST00000137649.7 ENSMUSP00000121982.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000137649.7Link to Ensembl Protein Viewer:ENSMUSP00000121982.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000137649Re-query CCDS DB by Protein ID:ENSMUSP00000121982
Original member Current member NCBI NM_001358891.1 NP_001345820.1 Accepted alive Link to Nucleotide Sequence:NM_001358891.1Link to Protein Sequence:NP_001345820.1Re-query CCDS DB by Nucleotide ID:NM_001358891Re-query CCDS DB by Protein ID:NP_001345820Link to BLAST:NP_001345820.1
Original member Current member NCBI NM_001358892.1 NP_001345821.1 Accepted alive Link to Nucleotide Sequence:NM_001358892.1Link to Protein Sequence:NP_001345821.1Re-query CCDS DB by Nucleotide ID:NM_001358892Re-query CCDS DB by Protein ID:NP_001345821Link to BLAST:NP_001345821.1
Original member Current member NCBI NM_001358893.1 NP_001345822.1 Accepted alive Link to Nucleotide Sequence:NM_001358893.1Link to Protein Sequence:NP_001345822.1Re-query CCDS DB by Nucleotide ID:NM_001358893Re-query CCDS DB by Protein ID:NP_001345822Link to BLAST:NP_001345822.1
Original member Current member NCBI NM_145471.3 NP_663446.1 Accepted alive Link to Nucleotide Sequence:NM_145471.3Link to Protein Sequence:NP_663446.1Re-query CCDS DB by Nucleotide ID:NM_145471Re-query CCDS DB by Protein ID:NP_663446Link to BLAST:NP_663446.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345820.1 493 Q8VC16 493 100% 0 0
NP_001345821.1 493 Q8VC16 493 100% 0 0
NP_001345822.1 493 Q8VC16 493 100% 0 0
NP_663446.1 493 Q8VC16 493 100% 0 0

Chromosomal Locations for CCDS 27589.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 76712892 76713220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76713401 76713985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76714080 76714647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1482 nt):
ATGCACACACTTGTGTTCCTCAGCACGCGTCAGGTCCTTCAGTGCCAGCCAGCTGCATGCCAGGCCCTGC
CCCTGCTGCCCCGGGAACTCTTCCCTCTGCTCTTCAAGGTGGCCTTCATGGACAAAAAGACGCTTGTGCT
GCGTGAGCTGGTGCACACGTGGCCCTTTCCCCTGCTCAGCTTCCAGCAGCTGCTGCAGGAGTGTGCCCAC
TGCAGTCGAGCCCTGCTGCAGGAGCGGCTCAGCACAGAAAGCATGCAGGCTGTGATCCTGGGGCTGACAG
CTCGGATTCACACTCAAGAAACAGAGGCTGGCACGCAGCCCTTGTGCAGGAAGCATGCATTGCGGGTTCT
GGACATGACGGGTCTCCTGGATGATGGTGTGGAGCAGGATCCTGAAACCATGAGCATGTGGGACTGTACA
GCCGCTGTAGCCAGAACGTGCATTGCCCAGCAGCAGGGTGGGACTGCCGAGCCAGGGCTGTCACCAGTCC
CCGTGGAAATCCGAGTAGACCTTCGGGTAAACCGGGCCTCGTACACATTCCTTCGTGAGGCCCTCCAAAG
CAGTGTGGCCAGCCCGCTGCGGCTGTGCTGCCGGGACCTGCGGGCTGAGGATCTACCCATGCGTAACACT
GTGGCCCTGCTACAGCTTTTAGATGCAGGCTGTCTGCGCCGGATAGACCTGCGCTTCAATAACCTGGGCT
TGCGTGGCCTGTCTGTCATTATCCCACATGTGGCCCGCTTTCAGCACTTAGCTAGCCTGAGGCTGCACTA
CGTGCATGGGGACTCAAGACAGCCTTCCGTGGACGGGGAGGACAACTTTCGCTACTTTCTGGCCCAGATG
GGCCGGTTTATGTGTCTTCGGGAGCTCAGCATGGGGTCTTCTCTCCTTTCAGGCAGGCTGGATCAACTGC
TCAGCACCCTGCAGAGGCCCCTGGAAAGCCTAGAACTGGCCTTCTGTGCGCTCTTGCCTGAGGACCTACG
CTTCCTGGCTCAGAGTTCTCATGCTGCCCATCTCAAAAAGTTGGATTTGAGTGGCAACGACCTGTCAGGC
AACCAGTTGACACCCTTCCAGGGTCTGCTGCAGGCAGTAGCCACCACACTGCTGCATCTTGAGCTGACTG
AGTGCCAGCTTGCTGATGCCCAGCTGTTGGCTACCCTGCCCACCCTCACTCGATGTGCCAGTCTCCGCTA
CCTTGGTCTCTATGGCAACCCTTTGTCTATGGCAGGACTTAAAGAACTGCTTCGGGACTCTGTGGTACAG
GCTGAGCTACGTACCGTGGTACACCCCTTCCCTGTGGACTGCTATGAGGGTCTTCCTTGGCCACCACCTG
CCTCTGTCCTTCTGGAAGCCTCCATCAATGAGGAGAAGTTTGCCCGGGTGGAAGCTGAGTTACACCAACT
GCTGTTAGCTTCGGGCCGTGCCCATGTGCTCTGGACCACAGACATCTATGGCCGGCTAGCTGCAGACTAT
TTTAGCCTCTGA

Translation (493 aa):
MHTLVFLSTRQVLQCQPAACQALPLLPRELFPLLFKVAFMDKKTLVLRELVHTWPFPLLSFQQLLQECAH
CSRALLQERLSTESMQAVILGLTARIHTQETEAGTQPLCRKHALRVLDMTGLLDDGVEQDPETMSMWDCT
AAVARTCIAQQQGGTAEPGLSPVPVEIRVDLRVNRASYTFLREALQSSVASPLRLCCRDLRAEDLPMRNT
VALLQLLDAGCLRRIDLRFNNLGLRGLSVIIPHVARFQHLASLRLHYVHGDSRQPSVDGEDNFRYFLAQM
GRFMCLRELSMGSSLLSGRLDQLLSTLQRPLESLELAFCALLPEDLRFLAQSSHAAHLKKLDLSGNDLSG
NQLTPFQGLLQAVATTLLHLELTECQLADAQLLATLPTLTRCASLRYLGLYGNPLSMAGLKELLRDSVVQ
AELRTVVHPFPVDCYEGLPWPPPASVLLEASINEEKFARVEAELHQLLLASGRAHVLWTTDIYGRLAADY
FSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH