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Report for CCDS276.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
276.1 Public Homo sapiens 1 CNKSR1 24 110 108 CCDS HistoryNCBI Gene:10256Re-query CCDS DB by CCDS ID:276.1Re-query CCDS DB by GeneID:10256See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 276.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361530.11 ENSP00000354609.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361530.11Link to Ensembl Protein Viewer:ENSP00000354609.6Re-query CCDS DB by Nucleotide ID:ENST00000361530Re-query CCDS DB by Protein ID:ENSP00000354609
Original member Current member NCBI NM_006314.3 NP_006305.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006314.3Link to Protein Sequence:NP_006305.2Re-query CCDS DB by Nucleotide ID:NM_006314Re-query CCDS DB by Protein ID:NP_006305Link to BLAST:NP_006305.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006305.2 713 Q969H4-2 713 100% 0 0

Chromosomal Locations for CCDS 276.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 26177548 26177599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26180453 26180610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26180715 26180896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26181857 26181941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26182361 26182402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26182480 26182584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26183197 26183256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26183346 26183414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26183729 26183830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26184071 26184141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26184214 26184287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26184401 26184507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26184585 26184612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26185014 26185186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26187168 26187241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26187411 26187482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26188234 26188307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26188442 26188503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26188598 26188697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26188772 26188953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26189279 26189548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2142 nt):
ATGGAACCGGTAGAGACCTGGACCCCCGGAAAGGTGGCAACTTGGCTGAGAGGTCTTGACGACTCCCTGC
AGGACTATCCCTTTGAGGACTGGCAGCTGCCTGGCAAGAACCTGCTCCAGCTCTGCCCCCAAAGCCTCGA
GGCTCTGGCTGTGCGGTCTCTGGGACACCAGGAGCTCATCCTGGGCGGGGTGGAACAGCTCCAGGCCCTG
AGCTCCAGGCTACAGACAGAGAACCTGCAAAGCCTGACAGAGGGACTTCTGGGGGCAACCCATGACTTCC
AGAGCATAGTCCAAGGCTGCCTGGGGGACTGTGCCAAGACCCCTATTGATGTCCTCTGTGCAGCTGTGGA
GCTGTTGCATGAAGCTGACGCCCTCCTCTTCTGGCTCAGCAGGTACCTCTTCTCCCACTTAAATGATTTC
TCAGCATGCCAGGAGATCCGAGACTTGTTGGAGGAGCTGAGCCAGGTCTTGCATGAGGATGGTCCAGCGG
CTGAGAAGGAGGGCACAGTCCTGAGGATCTGCAGCCACGTGGCTGGGATCTGCCACAACATCCTGGTCTG
CTGCCCCAAGGAGCTGCTGGAACAGAAGGCCGTGCTCGAGCAGGTGCAGCTGGACAGTCCATTGGGCCTA
GAAATTCACACCACCAGCAATTGCCAGCACTTTGTGTCCCAAGTGGACACCCAGGTTCCCACTGACTCCC
GACTGCAGATCCAGCCTGGAGACGAGGTTGTCCAGATCAACGAGCAGGTGGTGGTGGGATGGCCCCGTAA
GAACATGGTGAGGGAACTGCTGCGGGAGCCAGCCGGACTCAGCTTAGTGCTGAAGAAGATCCCGATACCG
GAGACCCCCCCACAGACGCCCCCTCAGGTCCTGGACTCCCCGCACCAGAGGAGCCCATCACTGTCTCTGG
CCCCACTGTCTCCCAGGGCCCCATCTGAAGACGTCTTTGCCTTTGACCTGTCTTCAAACCCCAGTCCCGG
ACCCAGCCCTGCCTGGACAGACTCTGCCTCCCTTGGCCCTGAGCCCCTGCCCATCCCCCCGGAACCCCCA
GCCATACTCCCAGCAGGGGTAGCAGGGACTCCAGGGCTCCCTGAATCCCCTGACAAGAGTCCTGTTGGTC
GGAAGAAATCAAAAGGCCTGGCGACCCGGCTGAGCCGCCGGCGGGTGTCATGCCGTGAGCTGGGCCGGCC
GGACTGTGACGGCTGGCTCCTGTTGCGAAAGGCACCGGGCGGCTTCATGGGCCCGCGCTGGCGCCGCCGC
TGGTTTGTGCTCAAGGGACACACGCTCTACTGGTACCGCCAGCCCCAGGATGAGAAGGCTGAGGGCCTCA
TCAATGTCTCCAACTATAGTCTGGAAAGTGGACATGATCAGAAGAAGAAATATGTGTTTCAGCTCACCCA
TGATGTGTACAAACCCTTCATCTTCGCTGCTGATACCCTGACAGATCTGAGCATGTGGGTGCGTCATCTC
ATTACCTGCATCTCCAAGTACCAGTCTCCAGGCCGGGCCCCCCCACCCCGAGAGGAAGACTGCTACAGTG
AGACCGAAGCAGAGGACCCGGACGATGAGGCTGGGTCCCACTCAGCCTCGCCCAGCCCTGCTCAAGCTGG
GAGTCCCCTCCATGGAGACACATCACCTGCAGCCACCCCCACACAGCGCAGCCCACGGACCTCCTTTGGC
TCTCTGACAGACAGCAGTGAAGAGGCACTGGAAGGAATGGTACGGGGGCTGAGGCAGGGTGGCGTGTCCC
TCCTAGGCCAGCCACAGCCCCTGACCCAGGAACAGTGGCGGAGCTCTTTCATGCGGCGCAACCGAGACCC
TCAGCTCAATGAGCGAGTGCACCGTGTGCGGGCGCTACAGAGCACACTCAAGGCAAAGCTGCAGGAGCTG
CAGGTCCTAGAAGAAGTGCTGGGTGACCCTGAGCTGACAGGAGAGAAGTTCCGCCAGTGGAAGGAGCAGA
ACCGGGAGCTGTACTCAGAGGGCCTGGGGGCCTGGGGAGTGGCACAGGCTGAAGGCAGCTCCCACATCTT
GACCTCTGACTCCACAGAACAGTCCCCCCACTCCCTGCCCTCTGACCCTGAAGAGCACTCCCATCTCTGC
CCCCTGACCTCAGAGAGCAGCCTCCGACCTCCTGACCTCTGA

Translation (713 aa):
MEPVETWTPGKVATWLRGLDDSLQDYPFEDWQLPGKNLLQLCPQSLEALAVRSLGHQELILGGVEQLQAL
SSRLQTENLQSLTEGLLGATHDFQSIVQGCLGDCAKTPIDVLCAAVELLHEADALLFWLSRYLFSHLNDF
SACQEIRDLLEELSQVLHEDGPAAEKEGTVLRICSHVAGICHNILVCCPKELLEQKAVLEQVQLDSPLGL
EIHTTSNCQHFVSQVDTQVPTDSRLQIQPGDEVVQINEQVVVGWPRKNMVRELLREPAGLSLVLKKIPIP
ETPPQTPPQVLDSPHQRSPSLSLAPLSPRAPSEDVFAFDLSSNPSPGPSPAWTDSASLGPEPLPIPPEPP
AILPAGVAGTPGLPESPDKSPVGRKKSKGLATRLSRRRVSCRELGRPDCDGWLLLRKAPGGFMGPRWRRR
WFVLKGHTLYWYRQPQDEKAEGLINVSNYSLESGHDQKKKYVFQLTHDVYKPFIFAADTLTDLSMWVRHL
ITCISKYQSPGRAPPPREEDCYSETEAEDPDDEAGSHSASPSPAQAGSPLHGDTSPAATPTQRSPRTSFG
SLTDSSEEALEGMVRGLRQGGVSLLGQPQPLTQEQWRSSFMRRNRDPQLNERVHRVRALQSTLKAKLQEL
QVLEEVLGDPELTGEKFRQWKEQNRELYSEGLGAWGVAQAEGSSHILTSDSTEQSPHSLPSDPEEHSHLC
PLTSESSLRPPDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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