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Report for CCDS27607.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27607.1 Public Mus musculus 15 Foxred2 23 108 98 CCDS HistoryNCBI Gene:239554Re-query CCDS DB by CCDS ID:27607.1Re-query CCDS DB by GeneID:239554See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27607.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000016696.12 ENSMUSP00000016696.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000016696.12Link to Ensembl Protein Viewer:ENSMUSP00000016696.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000016696Re-query CCDS DB by Protein ID:ENSMUSP00000016696
Original member Current member EBI ENSMUST00000117725.1 ENSMUSP00000113403.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117725.1Link to Ensembl Protein Viewer:ENSMUSP00000113403.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117725Re-query CCDS DB by Protein ID:ENSMUSP00000113403
Original member NCBI NM_001017983.2 NP_001017983.2 Updated not alive Link to Nucleotide Sequence:NM_001017983.2Link to Protein Sequence:NP_001017983.2Re-query CCDS DB by Nucleotide ID:NM_001017983Re-query CCDS DB by Protein ID:NP_001017983
Current member NCBI NM_001017983.3 NP_001017983.2 Accepted alive Link to Nucleotide Sequence:NM_001017983.3Link to Protein Sequence:NP_001017983.2Re-query CCDS DB by Nucleotide ID:NM_001017983Re-query CCDS DB by Protein ID:NP_001017983Link to BLAST:NP_001017983.2
Original member NCBI NM_001168260.1 NP_001161732.1 Updated not alive Link to Nucleotide Sequence:NM_001168260.1Link to Protein Sequence:NP_001161732.1Re-query CCDS DB by Nucleotide ID:NM_001168260Re-query CCDS DB by Protein ID:NP_001161732
Current member NCBI NM_001168260.2 NP_001161732.1 Accepted alive Link to Nucleotide Sequence:NM_001168260.2Link to Protein Sequence:NP_001161732.1Re-query CCDS DB by Nucleotide ID:NM_001168260Re-query CCDS DB by Protein ID:NP_001161732Link to BLAST:NP_001161732.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001017983.2 665 Q3USW5 665 100% 0 0
NP_001161732.1 665 Q3USW5 665 100% 0 0

Chromosomal Locations for CCDS 27607.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 77943160 77943392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77945579 77945749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77947018 77947259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77948354 77948519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77951970 77952136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77952295 77952561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77953283 77953534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77955589 77956088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1998 nt):
ATGGGTCCCTCGGGGCTGCTGGTGGCCCTAGCCTTGCACCTGGCAGTGTGTTCCCGTCCGCACCGGGACT
ACTGCGTCCTGGGCGCCGGTCCTGCGGGCCTGCAGATGGCCGCCTTCCTGCATCGAGCCGGCAGGGACTA
CGAGGTATTCGAACGCGAGTCCGCACCTGGCAGCTTCTTCACTCGCTACCCGCGCCACCGCAAGCTCATC
AGCATCAACAAGCGGCACACGGGCAAGGCCAACGCCGAGTTCAACCTCCGCCACGACTGGAACTCGCTGC
TCAGCGACGACCCACACCTGCTCTTCAGACACTACTCGCAGGCTTACTTCCCCGACGCCAGCGACATGGT
GCGCTACCTGGGTGACTTCGCGCGGCGCCTGGGGCTCCATGTGTTATACAACACAAACATCACCCATGTG
ACCCTGGACAAGGATCCACAAGCCTGGAACGGCCATTACTTCATTCTGACGGACCAGAAGGGCCAGGTTT
ACCAGTGCAGCGTCCTGCTTGTAGCCACTGGTCTGGCAGTCCCCAAACTGGTTGACTTCCCCGGCTCTGA
GTATGTGGAGGGGTACGAGTCTGTGTCCGTGGATCCTGAAGACTTTGTGGGCCAGAATGTGTTGATCCTG
GGCCATGGGAACTCAGCCTTCGAGACGGCAGAAAACATCTTGGGTGTCACTAACTTTGTCCACATGCTGA
GCCGTTCCCGGGTCCGGCTCTCCTGGGCCACCCACTATGTTGGAGATGTCAGAGCCATCAACAATGGCCT
GCTGGACACCTACCAGCTGAAATCACTAGACGGGCTCCTGGAATCAGACCTGGAGTATCTGGCCCTCGTG
AAGGACAGCAAGGGCAAGTTCCACGTCACCCTGAAATTCCTCCTGGAGAATAACAGCAGCCAGAGTGCCG
ACTCTATTCCCCTCCCCGAGGATGACAACGACAACTTTGCCATGCGGGTGGCCTACGACCGTGTCATCCG
CTGCCTGGGATGGACGTTTGACTTCTCCATTTTCGACCAGTCCCTCAGACTCTCCTCGGGGACTGAGTTC
AGCAAGAAATACCCACTGATCAAAGCCAGCTATGAATCCAAAGGAAGCCGGGGTCTCTTTATCCTAGGGA
CTGCCAGCCACTCAGTGGACTACCGGAAATCCGCTGGCGGCTTCATCCATGGATTCCGATACACAGTGCG
TGCTGTCCACCGGCTACTGGAACATCGGCACCATGGCATCCCCTGGCCATCCACAGAGTACCCCATCACA
CAGCTGACCAGCTCCATCATCCGGCGTGTAAATGAGGCTTCTGGGCTGTACCAGATGTTCAGTGTGCTGG
CTGACATCATCCTGTTGAAGGAGAACGCCACAGCCTTTGAGTACCTGGAGGAGTTCCCTATGCAGATGCT
GGCCCAGCTGGAGATGCTCACAGGGAGGACAGCACGGCATGGGCTCTTTGTCATCAACATGGAATATGGC
AAAAACTTCTCTGGGCCTGAGAAGGATGTCTTCTATTATGACCGGTCTGTGGCACACATAGAAGATGCCT
GGATGTCTAACTTCCTTCACCCTGTCATCTACTACTACAGACACCTCCCCACTGAGCAAGATATGCGGTT
CCGTCCTGCACAGTGGCCCCTGCCTCGGCCTACAGCCATCCACCACATCGTGGAGGACTTCCTGACTGAC
TGGACAGCCCCAGTAGGACACATCCTCCCATTGAGGCGCTTCTTGGAAAACTGTCTGGACACAGATCTGC
GTAGCTTTTATGCAGAGTCCTGTTTCCTGTTCACACTCACACGCCAGAGGCTGCCGCCCTTTTGCCAGCA
GGGATACCTGAGAATGCAGGGGCTCTCAAGCACCAAGAGCCTTTGGCAGCATGGTGTGGAAAGCAGGCTC
CTGCAGGACTACACGGCCATGGAGAACAGCAATAGGTGGCTTGGTGACCACTCCACAGCTCCAGAGCCTC
TGACTCAATCCCTTGACAGCAACAAAGAGGAGCTCTGA

Translation (665 aa):
MGPSGLLVALALHLAVCSRPHRDYCVLGAGPAGLQMAAFLHRAGRDYEVFERESAPGSFFTRYPRHRKLI
SINKRHTGKANAEFNLRHDWNSLLSDDPHLLFRHYSQAYFPDASDMVRYLGDFARRLGLHVLYNTNITHV
TLDKDPQAWNGHYFILTDQKGQVYQCSVLLVATGLAVPKLVDFPGSEYVEGYESVSVDPEDFVGQNVLIL
GHGNSAFETAENILGVTNFVHMLSRSRVRLSWATHYVGDVRAINNGLLDTYQLKSLDGLLESDLEYLALV
KDSKGKFHVTLKFLLENNSSQSADSIPLPEDDNDNFAMRVAYDRVIRCLGWTFDFSIFDQSLRLSSGTEF
SKKYPLIKASYESKGSRGLFILGTASHSVDYRKSAGGFIHGFRYTVRAVHRLLEHRHHGIPWPSTEYPIT
QLTSSIIRRVNEASGLYQMFSVLADIILLKENATAFEYLEEFPMQMLAQLEMLTGRTARHGLFVINMEYG
KNFSGPEKDVFYYDRSVAHIEDAWMSNFLHPVIYYYRHLPTEQDMRFRPAQWPLPRPTAIHHIVEDFLTD
WTAPVGHILPLRRFLENCLDTDLRSFYAESCFLFTLTRQRLPPFCQQGYLRMQGLSSTKSLWQHGVESRL
LQDYTAMENSNRWLGDHSTAPEPLTQSLDSNKEEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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