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Report for CCDS28095.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28095.1 Public Mus musculus 16 Atp13a5 23 108 98 CCDS HistoryNCBI Gene:268878Re-query CCDS DB by CCDS ID:28095.1Re-query CCDS DB by GeneID:268878See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28095.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075806.10 ENSMUSP00000075204.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075806.10Link to Ensembl Protein Viewer:ENSMUSP00000075204.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000075806Re-query CCDS DB by Protein ID:ENSMUSP00000075204
Original member Current member NCBI NM_175650.4 NP_783581.2 Accepted alive Link to Nucleotide Sequence:NM_175650.4Link to Protein Sequence:NP_783581.2Re-query CCDS DB by Nucleotide ID:NM_175650Re-query CCDS DB by Protein ID:NP_783581Link to BLAST:NP_783581.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_783581.2 1216 Q3TYU2-1 1216 100% 0 0

Chromosomal Locations for CCDS 28095.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 29232603 29232863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29234559 29234639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29237233 29237321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29248134 29248336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29251251 29251425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29260917 29260989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29263446 29263542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29266944 29267053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29275404 29275446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29277650 29277729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29279097 29279213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29280930 29281090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29281944 29282068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29293421 29293538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29297379 29297535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29298168 29298254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29308204 29308354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29310733 29310794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29314506 29314694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29316636 29316793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29321623 29321793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29327667 29327795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29328667 29328739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29333948 29334082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29339025 29339094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29348490 29348570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29348676 29348746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29348956 29349102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29350636 29350809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29378475 29378537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3651 nt):
ATGGAGAAGAGCAAGAAGGATGGCCACCAGGCTGTGCTCAATGAAGGGGAGGAGAATGAGCTGGAGGTGT
TTGGCTACCATACCCAGAATTTACGGAGAGCACTGTGCCTTGTCACAGCCATCCTGACTCTTGGGGCAGT
TCAGCTGATGTTCTACTGGAGGCCTGAGTGGTGGGTGTGGACCAGTTGCATCCCATGCCCCTTGCAAGAA
GCAGACACAATTTTGCTGAGGACAACCGATGAATTTCGAAGATATATGAGGAAAAAGGTCTTCTGCCTCC
ACTTATCCACACTGAAGTTTCCTATAAGCAAGAACCCAGAGGAACCTCTGGTAGCTGACCACCACTCAGT
CATAAACCAAGCTGTGATGAAGCCAGAACTAAAACTACGATGCATCCAAGTGCAGAAAATAAGGTACGTG
TGGGATTTCTTGAAGAAGCGATTTCAGAAAGTTGGGTTGCTGGAAGACAGTAACTCCTGCTTTGACATCC
ACCATACGTTTGGATTGGGTCTGACCAATGAAGAGCAAGAGGTCAGAAGGTTAGTGTGTGGGCCCAACTC
GATCGAGGTGGAGATCCAACCCATATGGAAGCTGCTTGTTAAACAGGTTTTAAATCCATTCTATGTGTTC
CAAGCCTTTACACTCACTCTGTGGCTGTCTCAGGGTTACATAGAATACTCTGTGGCTATCATCATCTTGA
CTGTTATCTCCATTGTTTTGAGTGTGTATGATTTGAGACAGCAATCAGTTAAGCTACACAAGCTTGTGGA
GGAGCACAACAAAGTCCAGGTCACGATCACAGTAAGAGACAAAGGTCTACAGGAGCTGGAGTCCCGTCTC
CTGGTTCCAGGAGATATTCTCATTCTTCCAGGGAAAATTTCACTGCCCTGTGATGCTATCTTGATCGATG
GGAGTTGTGTGGTGAATGAAGGAATGCTCACAGGAGAAAGTATACCTGTTACAAAGACACCATTGCCCCA
AACGGAGAACACCATGCCCTGGAAATCGCACAGTTTGGAGGACTACCGGAAACACGTGCTCTTCTGTGGA
ACAGAAGTTATTCAGGTCAAGCCATCTGCTCAGGGGCTTGTTAGAGCTGTTGTTCTGCAGACAGGTTATA
ATACAGCCAAAGGAGACTTAGTGAGATCCATCCTCTACCCTCGACCTCTGAACTTCAAACTGTATAATGA
TGCCTTCAAGTTCATGGTGTTCCTGGCCTGCGTTGGTGTTGTGGGATTTTTCTATGCCCTAGGTGTCTAT
ATGTACCATGAAGTACCTCCGAGAGAAACTGCAACCATGGCCCTGATCCTTCTCAGTGCCACCGTCCCTC
CCGTGCTCCCGGCTGCACTGACCATAGGCAACGTGTACGCCCAGAAGAGGTTGAAGAAGGAGAAGATTTT
CTGTATCTCCCCGCAGAGAATCAACATGTGTGGTCAGATCAACCTCGTGTGCTTCGACAAAACAGGAACT
CTGACAGAAGATGGGCTGGACCTCTGGGGGACTGTCCCCACCGCTGGCAACTGTTTCCAGGCAGTCCACA
GCTTTGCCTCAGGTGAGGCTGTGCCCTGGGGCCCACTGTGTGCAGCCATGACTAGCTGCCATTCTCTGAT
CCTTCTTGATGGGACCATCCAAGGAGACCCTTTGGACCTCAAAATGTTTGAAGGCACTGGTTGGAATATG
GAAGATAGCCAAGTGGCCTCCTGCAAATTTGGCATGGCAGATTCAAGCACAGTAATAAAACCAGGACCGA
AAGCCAGCCAGAGTCCTGTGGACAGCATCACCATCTTGCGCCAGTTTCCATTTTCCTCAGGCCTGCAAAG
GATGTCTGTGATTGCTCAGCTGGCTGGTGACCTTCACCTCCACGTCTACATGAAGGGAGCCCCAGAAATG
GTGGCCAGGTTCTGCCGCTCTGAAACGGTGCCTAAGAACTTCTCGCAGGAGCTGAGGAATTACACAGTGC
AAGGCTTCCGAGTCATTGCTCTTGCCCACAAAACCCTAAAGATGGAGAGGCTTTCAGATATGGACCATCT
AGCAAGGGAGAAAGTGGAGTCTGAGTTGGCCTTTCTGGGACTTCTCATAATGGAGAATCGCTTGAAAAAG
GAAACAAGGCCAGTGCTGAAGGAGCTGAGTGAGGCCCGCATCAGGACCGTGATGGTTACAGGTGACAATC
TTCAAACTGCCATCACTGTTGCTAAAAATTCTGAAATGATTCCTGTGGGCAGCCAGGTCGTCATTGTCGA
GGCTAATGAGCCAGGAGACCTTGTTCCTGCTTCTGTGACCTGGCAGCTGGTGGGGACCCAAGAGCCAGGC
TCTGGGAAGAAGGACACCTACATTGACATCGGAAACAGCTCTGTACCTGCTGGGAAAGGTTACCATTTTG
CAATGAGTGGGAAGTCATACCAAGTGTTATTTCATCATTTCTACAGCATGCTGCCACAAATTCTGGTTAA
TGGAACCATTTTTGCAAGAATGTCTCCTGGGCAGAAGTCAAGCCTCGTGGAAGAGTTTCAGAAATTAAAT
TATTATGTGGGCATGTGTGGAGATGGAGCCAATGACTGTGGGGCTTTGAAAATGGCTCATGCTGGCATCT
CACTATCAGAACAGGAAGCATCCGTGGCATCTCCCTTCACCTCGAAAACAGCCAATATCGAGTGTGTGCC
TCATCTCATCAGGGAGGGCCGGGCTGCTCTGGTCTCATCCTTCGGTGTATTTAAATACCTGACTATGTAC
GGCATCATCCAGTTTATTGGAACATCACTTCTGTACTGGCAACTACAGCTCTTTGGTAACTACCAGTACC
TCCTGCAAGATGTGGCCATCACGCTGATGGTCAGCTTAACAATGAGCATAAACCATGCCTACCCGAAGTT
GGCTCCCTACAGACCAGCAGGACAACTACTTTCTCCTCAGTTGCTACTCTCAGTCTTCATGAATTCCTGT
TTTACCTGCATTGTGCAAGTGTGTACATTTCTCACCGTGAAACAGCAGCCTTGGTACTGCGAGGTCTACA
AATACAGTGAATGCTTTCTGGTCAACCAAAGTAACCTCTCAGCCAACGTGAGTTTGGACCGAAACTGGAC
TGGAAATGCAACTCTGGTTCCCGCTTCTGTGCTAAGTTTCGAGGGCACTACGTTGTGGCCCATCGTCACC
TTCAACTGCATCTCTGCAGCATTTATTTTTTCTAAGGGAAAGCCGTTTCGGAAACCCATCTACGCAAACT
ATTTATTCTCCCTTCTGCTGGCATCTGCTGCGGGCCTCACTATTTTCATTCTGTTTTGTGATTTTCAAGA
CCTGTACCGTAAAATGGAGTTCATCCCAACCCCCACATCATGGAGAGTTTCAATTCTGATAGCAGCTTTT
GTCCAGTTCTGCGTTGCCTTCTTTGTAGAGGATGCCGTCCTTCAAAACAGAGAGCTCTGGCTGTTTATCA
AGAAAGAATTTGGATTCTACTCCAAAAGTCAGTATAGGATCTTGCAGAGAAAGCTGGCAGAGGACTCTAC
ATGGCCTCCCGTGAACAGGACAGATTATGCAGTCAATGGCAAAAATGGATTCTATGTCAACAGAGCCTAT
GAGAGCCCCGAAGAGGTCCCCAAAGGGAAGCTCAAGCTGGAAGAGCAGGCTTCAGAACAGCACTTTTGGA
CTAGACTGTAA

Translation (1216 aa):
MEKSKKDGHQAVLNEGEENELEVFGYHTQNLRRALCLVTAILTLGAVQLMFYWRPEWWVWTSCIPCPLQE
ADTILLRTTDEFRRYMRKKVFCLHLSTLKFPISKNPEEPLVADHHSVINQAVMKPELKLRCIQVQKIRYV
WDFLKKRFQKVGLLEDSNSCFDIHHTFGLGLTNEEQEVRRLVCGPNSIEVEIQPIWKLLVKQVLNPFYVF
QAFTLTLWLSQGYIEYSVAIIILTVISIVLSVYDLRQQSVKLHKLVEEHNKVQVTITVRDKGLQELESRL
LVPGDILILPGKISLPCDAILIDGSCVVNEGMLTGESIPVTKTPLPQTENTMPWKSHSLEDYRKHVLFCG
TEVIQVKPSAQGLVRAVVLQTGYNTAKGDLVRSILYPRPLNFKLYNDAFKFMVFLACVGVVGFFYALGVY
MYHEVPPRETATMALILLSATVPPVLPAALTIGNVYAQKRLKKEKIFCISPQRINMCGQINLVCFDKTGT
LTEDGLDLWGTVPTAGNCFQAVHSFASGEAVPWGPLCAAMTSCHSLILLDGTIQGDPLDLKMFEGTGWNM
EDSQVASCKFGMADSSTVIKPGPKASQSPVDSITILRQFPFSSGLQRMSVIAQLAGDLHLHVYMKGAPEM
VARFCRSETVPKNFSQELRNYTVQGFRVIALAHKTLKMERLSDMDHLAREKVESELAFLGLLIMENRLKK
ETRPVLKELSEARIRTVMVTGDNLQTAITVAKNSEMIPVGSQVVIVEANEPGDLVPASVTWQLVGTQEPG
SGKKDTYIDIGNSSVPAGKGYHFAMSGKSYQVLFHHFYSMLPQILVNGTIFARMSPGQKSSLVEEFQKLN
YYVGMCGDGANDCGALKMAHAGISLSEQEASVASPFTSKTANIECVPHLIREGRAALVSSFGVFKYLTMY
GIIQFIGTSLLYWQLQLFGNYQYLLQDVAITLMVSLTMSINHAYPKLAPYRPAGQLLSPQLLLSVFMNSC
FTCIVQVCTFLTVKQQPWYCEVYKYSECFLVNQSNLSANVSLDRNWTGNATLVPASVLSFEGTTLWPIVT
FNCISAAFIFSKGKPFRKPIYANYLFSLLLASAAGLTIFILFCDFQDLYRKMEFIPTPTSWRVSILIAAF
VQFCVAFFVEDAVLQNRELWLFIKKEFGFYSKSQYRILQRKLAEDSTWPPVNRTDYAVNGKNGFYVNRAY
ESPEEVPKGKLKLEEQASEQHFWTRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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