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Report for CCDS2822.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2822.1 Public Homo sapiens 3 RASSF1 24 110 108 CCDS HistoryNCBI Gene:11186Re-query CCDS DB by CCDS ID:2822.1Re-query CCDS DB by GeneID:11186See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2822.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395126.7 ENSP00000378558.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395126.7Link to Ensembl Protein Viewer:ENSP00000378558.3Re-query CCDS DB by Nucleotide ID:ENST00000395126Re-query CCDS DB by Protein ID:ENSP00000378558
Original member Current member EBI ENST00000616212.4 ENSP00000482696.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000616212.4Link to Ensembl Protein Viewer:ENSP00000482696.1Re-query CCDS DB by Nucleotide ID:ENST00000616212Re-query CCDS DB by Protein ID:ENSP00000482696
Original member Current member NCBI NM_001206957.2 NP_001193886.1 Accepted alive Link to Nucleotide Sequence:NM_001206957.2Link to Protein Sequence:NP_001193886.1Re-query CCDS DB by Nucleotide ID:NM_001206957Re-query CCDS DB by Protein ID:NP_001193886Link to BLAST:NP_001193886.1
Original member Current member NCBI NM_170712.3 NP_733830.1 Accepted alive Link to Nucleotide Sequence:NM_170712.3Link to Protein Sequence:NP_733830.1Re-query CCDS DB by Nucleotide ID:NM_170712Re-query CCDS DB by Protein ID:NP_733830Link to BLAST:NP_733830.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001193886.1 189 Q9NS23-3 189 100% 0 0
NP_733830.1 189 Q9NS23-3 189 100% 0 0

Chromosomal Locations for CCDS 2822.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 50330581 50330727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50331334 50331449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50331559 50331856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50332050 50332058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (570 nt):
ATGAGCTTGAACAAGGACGGTTCTTACACAGGCTTCATCAAGGTTCAGCTGAAGCTGGTGCGCCCTGTCT
CTGTGCCCTCCAGCAAGAAGCCACCCTCCTTGCAGGATGCCCGGCGGGGCCCAGGACGGGGCACAAGTGT
CAGGCGCCGCACTTCCTTTTACCTGCCCAAGGATGCTGTCAAGCACCTGCATGTGCTGTCACGCACAAGG
GCACGTGAAGTCATTGAGGCCCTGCTGCGAAAGTTCTTGGTGGTGGATGACCCCCGCAAGTTTGCACTCT
TTGAGCGCGCTGAGCGTCACGGCCAAGTGTACTTGCGGAAGCTGTTGGATGATGAGCAGCCCCTGCGGCT
GCGGCTCCTGGCAGGGCCCAGTGACAAGGCCCTGAGCTTTGTCCTGAAGGAAAATGACTCTGGGGAGGTG
AACTGGGACGCCTTCAGCATGCCTGAACTACATAACTTCCTACGTATCCTGCAGCGGGAGGAGGAGGAGC
ACCTCCGCCAGATCCTGCAGAAGTACTCCTATTGCCGCCAGAAGATCCAAGAGGCCCTGCACGCCTGCCC
CCTTGGGTGA

Translation (189 aa):
MSLNKDGSYTGFIKVQLKLVRPVSVPSSKKPPSLQDARRGPGRGTSVRRRTSFYLPKDAVKHLHVLSRTR
AREVIEALLRKFLVVDDPRKFALFERAERHGQVYLRKLLDDEQPLRLRLLAGPSDKALSFVLKENDSGEV
NWDAFSMPELHNFLRILQREEEEHLRQILQKYSYCRQKIQEALHACPLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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