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Report for CCDS28370.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28370.1 Public Mus musculus 17 Tulp4 23 108 98 CCDS HistoryNCBI Gene:68842Re-query CCDS DB by CCDS ID:28370.1Re-query CCDS DB by GeneID:68842See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28370.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039655.2 ENSMUSP00000049248.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039655.2Link to Ensembl Protein Viewer:ENSMUSP00000049248.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000039655Re-query CCDS DB by Protein ID:ENSMUSP00000049248
Original member Current member NCBI NM_054040.3 NP_473381.1 Accepted alive Link to Nucleotide Sequence:NM_054040.3Link to Protein Sequence:NP_473381.1Re-query CCDS DB by Nucleotide ID:NM_054040Re-query CCDS DB by Protein ID:NP_473381Link to BLAST:NP_473381.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_473381.1 1547 Q9JIL5 1547 100% 0 0

Chromosomal Locations for CCDS 28370.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 6138905 6139156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6176829 6176957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6185137 6185298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6198672 6198852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6201700 6201834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6206891 6207057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6213384 6213608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6214635 6214869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6219368 6219512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6222304 6222448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6224152 6224245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6229335 6229478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6231712 6234224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6236226 6236342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4644 nt):
ATGTATGCAGCAGTGGAACATGGGCCTGTGCTTTGCAGCGATTCCAACATCCTCTGCCTGTCCTGGAAGG
GGCGTGTTCCCAAGAGTGAGAAGGAGAAACCTGTGTGCAGAAGGCGCTACTATGAAGAGGGATGGTTGGC
CACAGGCAATGGGCGAGGTGTGGTGGGAGTGACTTTCACCTCGAGTCACTGTCGCAGAGATAGGAGTACA
CCACAGAGAATAAACTTCAACCTGCGAGGCCACAACAGTGAGGTTGTGCTGGTGAGATGGAATGAGCCAT
ACCAGAAACTGGCCACATGTGATGCAGACGGAGGAATCTTTGTGTGGATTCAATATGAAGGCAGGTGGTC
TGTGGAACTGGTCAATGACCGTGGGGCTCAGGTGAGTGATTTCACGTGGAGCCATGATGGGACTCAAGCT
CTCATTTCATATCGAGATGGGTTTGTCCTGGTTGGTTCTGTCAGTGGACAAAGACACTGGTCATCTGAAA
TCAACCTGGAGAGCCAGATCACCTGTGGTATATGGACTCCCGATGACCAGCAGGTGTTGTTTGGCACAGC
AGATGGGCAGGTGATCGTCATGGACTGCCACGGCAGAATGCTAGCCCATGTCCTCCTGCATGAATCTGAT
GGCATCCTCAGCATGTCCTGGAATTACCCCATCTTCCTGGTGGAGGACAGCAGTGAGAGTGACACTGACT
CGGATGATTATTCTCCTCCCCAAGATGGGCCCGCGGCTTACCCCATCCCTGTGCAGAACACCAAGCCGCT
GCTCACCGTCAGCTTCACCTCCGGAGACATCAGCTTAATGAACAACTATGACGACTTGTCTCCCACTGTC
ATCCGTTCAGGGCTGAAAGAGGTGGTGGCCCAGTGGTGTACGCAGGGAGACTTACTGGCAGTTGCTGGGA
TGGAGCAGCAGGCACAGCTCAGCGAACTGCCCAATGGTCCTCTTCTGAAGAGTGCCATGGTCAAGTTCTA
CAATGTTAGAGGAGAGCACATTTTCACTCTGGATACACTTGTACAGCGCCCTATCATCTCTATCTGTTGG
GGCCATCGGGACTCTAGGCTGCTTATGGCTTCAGGACCAGCCCTGTATGTGGTTCGTGTGGAACACCGAG
TGTCCAGTCTCCAGCTGTTGTGCCAACAGGCCATCGCCAGCACTCTTCGAGAAGACAAGGATGTTAACAA
GCTGACCTTGCCCCCTCGTCTCTGTTCCTACCTCTCCACTGCCTTCATTCCCACTATTAAGCCCCCGATT
CCAGACCCCAACAACATGCGAGACTTTGTCAGCTACCCCTCAGCGGGCAATGAACGGCTGCACTGCACCA
TGAAGCGCACAGAGGATGACCCAGAGGTCGGCGGGCCCTGCTACACACTCTACTTGGAGTACCTGGGAGG
GCTCGTGCCCATTCTCAAGGGGAGGCGCATCAGCAAACTGCGGCCAGAGTTTGTCATTATGGACCCTCGG
ACAGACAGCAAATCAGATGAGATCTATGGGAACAGCTTAATTTCTACTGTGATTGACAGCTGCAACTGCT
CAGACTCCAGTGATATCGAACTGAGTGATGATTGGGCTGCCAAGAAGTCTCCCAAAATCTCCAGATCTAG
CAAATCGCCCAAACTCCCAAGGATCAGCATTGAGGCCCGAAAGTCACCCAAGCTTCCACGGGCTGCTCAA
GAGATTTCTCGGTCTCCCCGATTGCCCATGCGCAAGCCCTCCATGGGCTCGCCCAGCCTGACACGGAGAG
AGTTTCCTTTTGAAGACATCACTCAGCACAACTATCTTGCTCAGGTCACATCCAATATCTGGGGAACCAA
GTTTAAGATTGTGGGCTTGGCTGCATTCCTACCAACCAACCTCGGTGCAGTAATCTATAAAACCAGCCTG
CTGCATCTCCAGCCTCGGCAGATGACCATTTATCTCCCGGAAGTTAGGAAGATTTCCATGGACTATATTA
ACCTGCCTGTCTTCAACCCAAACGTTTTCAGTGAAGATGAGGATGACTTACCAGTTACAGGAGCATCAGG
TGTCCCTGAAAACAACCCGCCCTGTACAGTGAACATCCCTATTGCACCAATCCACAGCTCTGCTCAAGCT
CTGTCTCCCACCCAGAGCATAGGGCTGGTGCAGTCCCTGCTGGCCAATCAAAATGTGCAGTTGGATGTCT
TAACCAATCAGACAACAGCTGTAGGGTCAGCAGAGCATGCAGGTGATGCTGCTACCCAGTACCCAGTCTC
CAGTCGGTACTCCAATCCTGGACAGGTGATTTTTGGAGGTGTAGAAATGGGCCGCATCATTCAGAATCCT
CCTCAATTGCCTTTGCCACCACCGCCACCACCACCACCACAGGCGCCTATGCAGCTGTCTGCGGTGGACC
ATGGAGATCGGGACCATGAGCACCTGCAGAAGTCAGCCAAGGCCCTGCGCCCAGTGCCTCAGCTGGCTGC
CGAGGGGGATGCGGTAGTTTTCAGTGCCCCGCAGGAGGTCCAGGTGGCGAAGATGAATCCCCCACCCCCG
TATCCAGGAACTATCCCTGCTGCCCCCACCACGGCTGCACCCCCACCCCCTCTGCCACCACCACAGCCCC
CAGTGGATGTGTGTTTGAAGAAGGGTGACTTCTCACTGTACCCTACAGCAGCACATTACCAGCCTCCACT
AGGCTATGAGAGGATTACCACCTTTGACAGCAGTGGCAATGTGGAAGAGGTGTGCCGGCCTCGGACTCGG
ATGCTCTGTTCCCAGAACACCTACACTCTCCCTGGCCCAGGCAGTTCTGCCACCTTGAGACTCACAGCCA
CTGAGAAGAAGGTCCCCCAACCCTGCACCAGTGCGACTCTGAACCGACTAACTGTCCCTCGATACTCCAT
CCCCACAGGGGACCCACCTCCTTACCCTGAAATTGCTAGCCAGCTGGCCCAGGGGCGGAGTGCCGCTCAA
AGGCTGGACAACAGTCTCATCCATGCCACCCTACGAAGGAACAACCGAGAGGTGGCACTTAAGATGGCCC
AGCTGGCAGACAGCTCCCGTGCCCCACTGCAGCCCCTAGCCAAGCCTAAGGGGGGTGCTGCTGGGGCAGT
GGCACAGCTCCCAGCAAGACCTCCACCTGCCCTATACACCTGCAGCCAGTGCAGTGGAGCAGGGCCCAGC
TCCCAGTCAGGTGCAGCCCTGGCCCATGCTATCAGCACCTCCCCACTGGCCTCCCAGTCCTCCTATAATC
TTCTAAGCCCTCCTGACACCTCCCGTGATCGTACTGACTATGTCAACTCAGCCTTCACCGAGGATGAGGC
CCTGTCTCAGCACTGTCAGCTCGAGAAGCCTCTGAGGCACCCCCCACTTCCTGAAGCTGCTGTCACCATG
AAGCGACCTCCCCCTTACCAGTGGGACCCCATGCTGGGTGAGGACGTTTGGGTTCCCCAGGAAAGGACAG
CACAACCTACAGTGCCCAACCCCTTAAAACTGTCCCCCCTCATGCTAGGGCAAGGCCAGCACCTGGATGT
GGCTCGAGTGCCCTTTGTGCCTCCCAAGTCTCCGTCCAGCCCTACTGCCACCTTCCCGACAGGCTATGGG
ATGGGAATGCCATATCCAGGCAGCTATAACAACCCCTCTTTGCCTGGAGTACAAGCTCCATGCTCCCCTA
AGGATGCCCTGTCCCAGGCACAGTTTGCACAACAGGAGTCTGCTGTGGTACTTCAGCCAGCATACCCACC
CAGCCTTTCCTACTGCACCTTGCCCCCCACATACCCAGGAAGCAGCACCTGCTCCAGTGTACAGCTGCCG
CCCATCGCCTTGCACCCTTGGAACTCCTACAGCACCTGCCCGCCCATGCAGAACACCCAGGGCACTCTTC
CCCCCAAGCCCCACTTAGTGGTGGAGAAGCCTCTTGTGTCCCCTCCACCTGCCGAGCTCCAAAGCCACAT
GGGCACAGAGGTGATGGTAGAGACTGCAGACAATTTCCAAGAAGTCCTCTCTCTGACAGAAAGCCCTGTA
CCGCAGAGAACGGAAAAATTCGGAAAGAAGAACCGGAAGCGCCTGGATAGCCGAGCAGAGGAAGGAAGTG
TTCAGGCCATCACTGAGGGCAAAGTGAAAAAGGATGCTAGGACTTTGAGTGACTTTAATTCTCTCATCTC
CAGCCCCCGCCTAGGGAGAGAGAAGAAGAAAGTGAAAAGTCAGAAAGACCAACTGAAGTCAAAGAAGTTG
AACAAGACAAACGAGTTCCAGGACAGCTCAGAGAGTGAGCCCGAGCTGTTCATCAGCGGGGATGAGCTGA
TGAACCAAAGCCAGGGCAGCAAGAAGGGGTGGAAAAGCAAGAGGAGCCTGCGGACCGCCAGTGAGCTGGA
GGAATTCAAGTGCCGCAAAGCCAGTGAGAAGGAAGATGGGCGGCTGGGCAGCCAGGGCTTCGTGTACGTG
ATGGCCAACAAGCAGCCACTGTGGAACGAAGCCACACAGGTGTACCAGCTGGACTTCGGAGGAAGGGTGA
CCCAGGAGTCTGCCAAGAATTTCCAGATTGAGTTGGAAGGACGACAGGTGATGCAGTTTGGACGGATTGA
TGGCAACGCATACATCCTAGACTTCCAGTACCCCTTCTCAGCTGTTCAGGCTTTTGCTGTTGCCCTGGCC
AATGTGACTCAGCGCCTAAAATGA

Translation (1547 aa):
MYAAVEHGPVLCSDSNILCLSWKGRVPKSEKEKPVCRRRYYEEGWLATGNGRGVVGVTFTSSHCRRDRST
PQRINFNLRGHNSEVVLVRWNEPYQKLATCDADGGIFVWIQYEGRWSVELVNDRGAQVSDFTWSHDGTQA
LISYRDGFVLVGSVSGQRHWSSEINLESQITCGIWTPDDQQVLFGTADGQVIVMDCHGRMLAHVLLHESD
GILSMSWNYPIFLVEDSSESDTDSDDYSPPQDGPAAYPIPVQNTKPLLTVSFTSGDISLMNNYDDLSPTV
IRSGLKEVVAQWCTQGDLLAVAGMEQQAQLSELPNGPLLKSAMVKFYNVRGEHIFTLDTLVQRPIISICW
GHRDSRLLMASGPALYVVRVEHRVSSLQLLCQQAIASTLREDKDVNKLTLPPRLCSYLSTAFIPTIKPPI
PDPNNMRDFVSYPSAGNERLHCTMKRTEDDPEVGGPCYTLYLEYLGGLVPILKGRRISKLRPEFVIMDPR
TDSKSDEIYGNSLISTVIDSCNCSDSSDIELSDDWAAKKSPKISRSSKSPKLPRISIEARKSPKLPRAAQ
EISRSPRLPMRKPSMGSPSLTRREFPFEDITQHNYLAQVTSNIWGTKFKIVGLAAFLPTNLGAVIYKTSL
LHLQPRQMTIYLPEVRKISMDYINLPVFNPNVFSEDEDDLPVTGASGVPENNPPCTVNIPIAPIHSSAQA
LSPTQSIGLVQSLLANQNVQLDVLTNQTTAVGSAEHAGDAATQYPVSSRYSNPGQVIFGGVEMGRIIQNP
PQLPLPPPPPPPPQAPMQLSAVDHGDRDHEHLQKSAKALRPVPQLAAEGDAVVFSAPQEVQVAKMNPPPP
YPGTIPAAPTTAAPPPPLPPPQPPVDVCLKKGDFSLYPTAAHYQPPLGYERITTFDSSGNVEEVCRPRTR
MLCSQNTYTLPGPGSSATLRLTATEKKVPQPCTSATLNRLTVPRYSIPTGDPPPYPEIASQLAQGRSAAQ
RLDNSLIHATLRRNNREVALKMAQLADSSRAPLQPLAKPKGGAAGAVAQLPARPPPALYTCSQCSGAGPS
SQSGAALAHAISTSPLASQSSYNLLSPPDTSRDRTDYVNSAFTEDEALSQHCQLEKPLRHPPLPEAAVTM
KRPPPYQWDPMLGEDVWVPQERTAQPTVPNPLKLSPLMLGQGQHLDVARVPFVPPKSPSSPTATFPTGYG
MGMPYPGSYNNPSLPGVQAPCSPKDALSQAQFAQQESAVVLQPAYPPSLSYCTLPPTYPGSSTCSSVQLP
PIALHPWNSYSTCPPMQNTQGTLPPKPHLVVEKPLVSPPPAELQSHMGTEVMVETADNFQEVLSLTESPV
PQRTEKFGKKNRKRLDSRAEEGSVQAITEGKVKKDARTLSDFNSLISSPRLGREKKKVKSQKDQLKSKKL
NKTNEFQDSSESEPELFISGDELMNQSQGSKKGWKSKRSLRTASELEEFKCRKASEKEDGRLGSQGFVYV
MANKQPLWNEATQVYQLDFGGRVTQESAKNFQIELEGRQVMQFGRIDGNAYILDFQYPFSAVQAFAVALA
NVTQRLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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