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Report for CCDS28663.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28663.2 Public Mus musculus 17 Cfb 23 108 98 CCDS HistoryNCBI Gene:14962Re-query CCDS DB by CCDS ID:28663.2Re-query CCDS DB by GeneID:14962See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 28663.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript data, and by conservation in rat.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by CCDS collaboration)

Sequence IDs included in CCDS 28663.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025229.10 ENSMUSP00000025229.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025229.10Link to Ensembl Protein Viewer:ENSMUSP00000025229.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000025229Re-query CCDS DB by Protein ID:ENSMUSP00000025229
Original member NCBI NM_008198.2 NP_032224.2 Updated not alive Link to Nucleotide Sequence:NM_008198.2Link to Protein Sequence:NP_032224.2Re-query CCDS DB by Nucleotide ID:NM_008198Re-query CCDS DB by Protein ID:NP_032224
Current member NCBI NM_008198.3 NP_032224.2 Accepted alive Link to Nucleotide Sequence:NM_008198.3Link to Protein Sequence:NP_032224.2Re-query CCDS DB by Nucleotide ID:NM_008198Re-query CCDS DB by Protein ID:NP_032224Link to BLAST:NP_032224.2

Chromosomal Locations for CCDS 28663.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 34856427 34856582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34856880 34856929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34857004 34857136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34857219 34857319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34857492 34857568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34857668 34857821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34858037 34858154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34858498 34858595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34859009 34859146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34859230 34859331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34859442 34859573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34859936 34860074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34860286 34860422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34860524 34860625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34860763 34860936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34861028 34861213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34861731 34861964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34862052 34862112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2292 nt):
ATGACAATGGAGAGCCCCCAGCTCTGCCTCGTCCTCTTGGTCTTAGGCTTCTCCTCTGGAGGTGTGAGCG
CAACTCCAGTGCTTGAGGCCCGGCCCCAAGTCTCCTGCTCTCTGGAGGGAGTAGAGATCAAAGGCGGCTC
CTTTCAACTTCTCCAAGGCGGTCAGGCCCTGGAGTACCTATGTCCCTCTGGCTTCTACCCATACCCCGTG
CAGACTCGAACCTGCAGATCCACAGGCTCCTGGAGCGACCTGCAGACCCGAGACCAAAAGATTGTCCAGA
AGGCGGAATGCAGAGCAATACGCTGCCCACGACCGCAGGACTTTGAAAATGGGGAATTCTGGCCCCGGTC
CCCCTTCTACAACCTGAGTGACCAGATTTCTTTTCAATGCTATGATGGTTACGTTCTCCGGGGCTCTGCT
AATCGCACCTGCCAAGAGAATGGCCGGTGGGATGGGCAAACAGCAATTTGTGATGATGGAGCTGGATACT
GTCCCAATCCCGGTATTCCTATTGGGACAAGGAAGGTGGGTAGCCAATACCGCCTTGAAGACATTGTTAC
TTACCACTGCAGCCGGGGACTTGTCCTGCGTGGCTCCCAGAAGCGAAAGTGTCAAGAAGGTGGCTCATGG
AGTGGGACAGAGCCTTCCTGCCAAGATTCCTTCATGTATGACAGCCCTCAAGAAGTGGCCGAAGCATTCC
TATCCTCCCTGACAGAGACCATCGAAGGAGCCGATGCTGAGGATGGGCACAGCCCAGGAGAACAGCAGAA
GAGGAAGATTGTCCTAGACCCCTCGGGCTCCATGAATATCTACCTGGTGCTAGATGGATCAGACAGCATC
GGAAGCAGCAACTTCACAGGGGCTAAGCGGTGCCTCACCAACTTGATTGAGAAGGTGGCGAGTTACGGGG
TGAGGCCACGATATGGTCTCCTGACATATGCTACAGTCCCCAAAGTGTTGGTCAGAGTGTCTGATGAGAG
GAGTAGCGATGCCGACTGGGTCACAGAGAAGCTCAACCAAATCAGTTATGAAGACCACAAGCTGAAGTCA
GGGACCAACACCAAGAGGGCTCTCCAGGCTGTGTATAGCATGATGAGCTGGGCAGGGGATGCCCCGCCTG
AAGGCTGGAATAGAACCCGCCATGTCATCATCATTATGACTGATGGCTTGCACAACATGGGTGGAAACCC
TGTCACTGTCATTCAGGACATCCGAGCCTTGCTGGACATCGGCAGGGATCCCAAAAATCCCAGGGAGGAT
TACCTGGATGTGTATGTGTTTGGGGTCGGGCCTCTGGTGGACTCCGTGAACATCAATGCCTTAGCTTCCA
AAAAGGACAATGAGCATCATGTGTTTAAAGTCAAGGATATGGAAGACCTGGAGAATGTTTTCTACCAAAT
GATTGATGAAACCAAATCTCTGAGTCTCTGTGGCATGGTGTGGGAGCATAAAAAAGGCAACGATTATCAT
AAGCAACCATGGCAAGCCAAGATCTCAGTCACTCGCCCTCTGAAAGGACATGAGACCTGTATGGGGGCCG
TGGTGTCTGAGTACTTCGTGCTGACAGCAGCGCACTGCTTCATGGTGGATGATCAGAAACATTCCATCAA
GGTCAGCGTGGGGGGTCAGAGGCGGGACCTGGAGATTGAAGAGGTCCTGTTCCACCCCAAATACAATATT
AATGGGAAAAAGGCAGAAGGGATCCCTGAGTTCTATGATTATGATGTGGCCCTAGTCAAGCTCAAGAACA
AGCTCAAGTATGGCCAGACTCTCAGGCCCATCTGTCTCCCCTGCACGGAGGGAACCACACGAGCCTTGAG
GCTTCCTCAGACAGCCACCTGCAAGCAGCACAAGGAACAGTTGCTCCCTGTGAAGGATGTCAAAGCTCTG
TTTGTATCTGAGCAAGGGAAGAGCCTGACTCGGAAGGAGGTGTACATCAAGAATGGGGACAAGAAAGCCA
GTTGTGAGAGAGATGCTACAAAGGCCCAAGGCTATGAGAAGGTCAAAGATGCCTCTGAGGTGGTCACTCC
ACGGTTCCTCTGCACAGGAGGGGTGGATCCCTATGCTGACCCCAACACATGCAAAGGAGATTCCGGGGGC
CCTCTCATTGTTCACAAGAGAAGCCGCTTCATTCAAGTTGGTGTGATTAGCTGGGGAGTAGTAGATGTCT
GCAGAGACCAGAGGCGGCAACAGCTGGTACCCTCTTATGCCCGGGACTTCCACATCAACCTCTTCCAGGT
GCTGCCCTGGCTAAAGGACAAGCTCAAAGATGAGGATTTGGGTTTTCTATAA

Translation (763 aa):
MTMESPQLCLVLLVLGFSSGGVSATPVLEARPQVSCSLEGVEIKGGSFQLLQGGQALEYLCPSGFYPYPV
QTRTCRSTGSWSDLQTRDQKIVQKAECRAIRCPRPQDFENGEFWPRSPFYNLSDQISFQCYDGYVLRGSA
NRTCQENGRWDGQTAICDDGAGYCPNPGIPIGTRKVGSQYRLEDIVTYHCSRGLVLRGSQKRKCQEGGSW
SGTEPSCQDSFMYDSPQEVAEAFLSSLTETIEGADAEDGHSPGEQQKRKIVLDPSGSMNIYLVLDGSDSI
GSSNFTGAKRCLTNLIEKVASYGVRPRYGLLTYATVPKVLVRVSDERSSDADWVTEKLNQISYEDHKLKS
GTNTKRALQAVYSMMSWAGDAPPEGWNRTRHVIIIMTDGLHNMGGNPVTVIQDIRALLDIGRDPKNPRED
YLDVYVFGVGPLVDSVNINALASKKDNEHHVFKVKDMEDLENVFYQMIDETKSLSLCGMVWEHKKGNDYH
KQPWQAKISVTRPLKGHETCMGAVVSEYFVLTAAHCFMVDDQKHSIKVSVGGQRRDLEIEEVLFHPKYNI
NGKKAEGIPEFYDYDVALVKLKNKLKYGQTLRPICLPCTEGTTRALRLPQTATCKQHKEQLLPVKDVKAL
FVSEQGKSLTRKEVYIKNGDKKASCERDATKAQGYEKVKDASEVVTPRFLCTGGVDPYADPNTCKGDSGG
PLIVHKRSRFIQVGVISWGVVDVCRDQRRQQLVPSYARDFHINLFQVLPWLKDKLKDEDLGFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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