NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS2876.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2876.1 Public Homo sapiens 3 LRTM1 24 110 108 CCDS HistoryNCBI Gene:57408Re-query CCDS DB by CCDS ID:2876.1Re-query CCDS DB by GeneID:57408See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2876.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000273286.6 ENSP00000273286.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000273286.6Link to Ensembl Protein Viewer:ENSP00000273286.5Re-query CCDS DB by Nucleotide ID:ENST00000273286Re-query CCDS DB by Protein ID:ENSP00000273286
Original member Current member NCBI NM_020678.4 NP_065729.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020678.4Link to Protein Sequence:NP_065729.1Re-query CCDS DB by Nucleotide ID:NM_020678Re-query CCDS DB by Protein ID:NP_065729Link to BLAST:NP_065729.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065729.1 345 Q9HBL6-1 345 100% 0 0

Chromosomal Locations for CCDS 2876.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 54918459 54918892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54924619 54925215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54927905 54927911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1038 nt):
ATGAAAGGTGAACTGCTCCTGTTTTCCAGTGTGATTGTCCTGCTCCAGGTGGTATGCAGCTGCCCGGACA
AGTGTTACTGTCAGTCATCTACAAATTTTGTAGACTGCAGCCAGCAGGGTCTGGCCGAAATCCCTTCCCA
TTTACCTCCTCAGACTCGAACGCTGCATTTACAAGATAATCAGATACACCATCTTCCTGCTTTTGCATTT
AGGTCAGTGCCATGGCTCATGACCTTAAACTTGTCCAACAATTCCCTTTCAAATCTGGCCCCTGGAGCTT
TCCATGGGCTTCAGCACTTGCAGGTTTTAAATCTAACCCAGAATTCACTCCTTTCCCTGGAAAGCAGACT
TTTCCATTCCCTCCCTCAGCTGAGGGAGCTTGATTTGTCATCAAACAACATAAGCCACCTTCCCACATCC
TTGGGAGAGACTTGGGAGAACCTAACTATACTTGCGGTTCAACAAAACCAGCTTCAGCAGCTTGATCGAG
CGCTCCTGGAATCCATGCCCAGTGTGAGGCTTTTACTTCTCAAGGACAACCTCTGGAAATGCAATTGCCA
CTTGCTCGGTCTTAAACTCTGGCTGGAGAAATTTGTCTATAAAGGGGGACTAACAGACGGCATCATCTGT
GAATCACCAGACACCTGGAAGGGAAAGGACCTCCTTAGGATCCCTCATGAGCTGTACCAGCCCTGCCCTC
TTCCTGCTCCTGATCCAGTGTCCTCGCAGGCTCAGTGGCCCGGCTCTGCCCACGGTGTGGTCCTGAGGCC
TCCTGAGAACCACAACGCGGGGGAGCGAGAACTCTTGGAGTGCGAGCTCAAACCCAAGCCAAGGCCGGCC
AACCTGCGTCATGCCATTGCCACTGTCATCATCACTGGCGTTGTGTGTGGGATTGTGTGTCTCATGATGT
TGGCAGCTGCCATCTATGGCTGCACCTATGCGGCAATCACAGCCCAGTACCATGGGGGACCCTTGGCTCA
AACCAATGATCCTGGGAAGGTGGAAGAAAAAGAGCGATTTGACAGCTCACCAGCCTGA

Translation (345 aa):
MKGELLLFSSVIVLLQVVCSCPDKCYCQSSTNFVDCSQQGLAEIPSHLPPQTRTLHLQDNQIHHLPAFAF
RSVPWLMTLNLSNNSLSNLAPGAFHGLQHLQVLNLTQNSLLSLESRLFHSLPQLRELDLSSNNISHLPTS
LGETWENLTILAVQQNQLQQLDRALLESMPSVRLLLLKDNLWKCNCHLLGLKLWLEKFVYKGGLTDGIIC
ESPDTWKGKDLLRIPHELYQPCPLPAPDPVSSQAQWPGSAHGVVLRPPENHNAGERELLECELKPKPRPA
NLRHAIATVIITGVVCGIVCLMMLAAAIYGCTYAAITAQYHGGPLAQTNDPGKVEEKERFDSSPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH