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Report for CCDS2896.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2896.1 Public Homo sapiens 3 CEP15 24 110 108 CCDS HistoryNCBI Gene:57415Re-query CCDS DB by CCDS ID:2896.1Re-query CCDS DB by GeneID:57415See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2896.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000232519.9 ENSP00000232519.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000232519.9Link to Ensembl Protein Viewer:ENSP00000232519.5Re-query CCDS DB by Nucleotide ID:ENST00000232519Re-query CCDS DB by Protein ID:ENSP00000232519
Original member Current member EBI ENST00000494481.5 ENSP00000418086.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000494481.5Link to Ensembl Protein Viewer:ENSP00000418086.1Re-query CCDS DB by Nucleotide ID:ENST00000494481Re-query CCDS DB by Protein ID:ENSP00000418086
Original member Current member EBI ENST00000462069.6 ENSP00000419977.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000462069.6Link to Ensembl Protein Viewer:ENSP00000419977.1Re-query CCDS DB by Nucleotide ID:ENST00000462069Re-query CCDS DB by Protein ID:ENSP00000419977
Original member Current member EBI ENST00000542214.2 ENSP00000438275.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000542214.2Link to Ensembl Protein Viewer:ENSP00000438275.1Re-query CCDS DB by Nucleotide ID:ENST00000542214Re-query CCDS DB by Protein ID:ENSP00000438275
Original member Current member NCBI NM_001291941.3 NP_001278870.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001291941.3Link to Protein Sequence:NP_001278870.1Re-query CCDS DB by Nucleotide ID:NM_001291941Re-query CCDS DB by Protein ID:NP_001278870Link to BLAST:NP_001278870.1
Original member Current member NCBI NM_001291942.3 NP_001278871.1 Accepted alive Link to Nucleotide Sequence:NM_001291942.3Link to Protein Sequence:NP_001278871.1Re-query CCDS DB by Nucleotide ID:NM_001291942Re-query CCDS DB by Protein ID:NP_001278871Link to BLAST:NP_001278871.1
Original member Current member NCBI NM_020685.6 NP_065736.1 Accepted alive Link to Nucleotide Sequence:NM_020685.6Link to Protein Sequence:NP_065736.1Re-query CCDS DB by Nucleotide ID:NM_020685Re-query CCDS DB by Protein ID:NP_065736Link to BLAST:NP_065736.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001278870.1 128 Q9HBI5 128 100% 0 0
NP_001278871.1 128 Q9HBI5 128 100% 0 0
NP_065736.1 128 Q9HBI5 128 100% 0 0

Chromosomal Locations for CCDS 2896.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 62320472 62320524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62321930 62322053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62331325 62331399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62333255 62333389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (387 nt):
ATGACTTCCTTGTTTGCTCAAGAAATTCGCCTTTCTAAAAGACATGAAGAAATAGTATCACAAAGATTAA
TGTTACTTCAACAAATGGAGAATAAATTGGGTGATCAACACACAGAAAAGGCATCTCAACTCCAAACTGT
TGAGACTGCTTTTAAAAGGAACCTTAGTCTTTTAAAGGATATAGAAGCAGCAGAAAAGTCACTACAGACC
AGGATTCACCCACTTCCACGGCCTGAGGTGGTTTCTCTTGAGACTCGTTACTGGGCATCAGTAGAAGAAT
ATATTCCCAAATGGGAACAGTTTCTTTTAGGAAGAGCACCATATCCTTTTGCTGTTGAAAATCAAAATGA
AGCAGAAAATACCATTCAAAATGAGGCACAGCGATAA

Translation (128 aa):
MTSLFAQEIRLSKRHEEIVSQRLMLLQQMENKLGDQHTEKASQLQTVETAFKRNLSLLKDIEAAEKSLQT
RIHPLPRPEVVSLETRYWASVEEYIPKWEQFLLGRAPYPFAVENQNEAENTIQNEAQR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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