CCDS Report for Consensus CDS

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Report for CCDS29139.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
29139.1	Public	Mus musculus	18	Ctnna1	23	108	98

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29139.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000042345.7	ENSMUSP00000049007.6	Accepted	alive
		NCBI	NM_009818.1	NP_033948.1	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_033948.1	906	P26231	906	100%	0	0

Chromosomal Locations for CCDS 29139.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)

Genome Browser links:

Chromosome	Start	Stop
18	35152603	35152707
18	35154345	35154540
18	35174253	35174419
18	35175097	35175216
18	35179685	35179954
18	35182350	35182553
18	35222065	35222145
18	35223423	35223575
18	35235608	35235700
18	35239383	35239539
18	35243955	35244155
18	35244697	35244848
18	35249702	35249812
18	35250846	35251027
18	35251166	35251271
18	35252616	35252750
18	35253605	35253892

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2721 nt):
ATGACTGCCGTCCACGCAGGCAACATAAACTTCAAATGGGACCCCAAAAGTCTGGAGATTAGGACTCTGG CTGTTGAAAGACTGTTGGAGCCTCTTGTTACACAGGTTACAACCCTGGTAAACACCAATAGTAAAGGGCC GTCTAATAAAAAGAGAGGCCGTTCTAAGAAGGCCCATGTTTTGGCTGCATCTGTTGAACAAGCAACTGAG AATTTCTTGGAAAAGGGGGATAAAATTGCAAAAGAGAGCCAGTTTCTCAAGGAGGAGCTTGTGGTTGCTG TAGAAGATGTTCGAAAACAAGGAGATTTGATGAAGAGCGCTGCTGGGGAGTTTGCAGATGATCCATGCTC TTCTGTGAAGCGAGGCAACATGGTCCGGGCAGCTCGAGCTTTGCTCTCTGCCGTCACCCGGCTGCTGATT CTGGCTGACATGGCAGATGTCTACAAATTACTTGTTCAGCTGAAAGTTGTGGAAGATGGTATATTGAAAC TGAGGAATGCTGGCAATGAACAAGACTTAGGGATACAGTACAAAGCTCTGAAACCAGAAGTAGATAAGCT GAACATCATGGCAGCAAAAAGACAACAGGAACTAAAAGATGTGGGCAATCGTGATCAGATGGCTGCAGCT AGAGGAATCCTGCAGAAAAATGTTCCAATCCTCTATACTGCATCCCAGGCATGTCTACAACACCCTGATG TTGCAGCCTATAAGGCCAACCGGGACTTGATATACAAGCAGCTGCAGCAGGCCGTCACAGGAATTTCTAA TGCAGCCCAGGCTACTGCATCAGATGATGCTGCCCAGCACCAGGGTGGCAGTGGCGGAGAGCTGGCATAC GCTCTCAACAACTTTGATAAACAAATCATTGTGGACCCCTTGAGCTTCAGCGAGGAGCGCTTTAGGCCGT CCCTGGAGGAGCGCCTGGAAAGCATTATTAGTGGGGCTGCCCTGATGGCTGACTCATCCTGCACACGTGA TGACCGTCGGGAGCGCATTGTGGCAGAGTGTAATGCTGTCCGCCAGGCTCTACAGGACCTGCTCTCAGAA TACATGGGCAACGCTGGACGTAAAGAAAGAAGTGATGCACTCAACTCTGCAATAGATAAAATGACCAAGA AGACCAGGGACTTGCGTAGACAGCTTCGCAAAGCTGTCATGGACCACGTATCAGATTCTTTCCTGGAGAC CAATGTCCCTCTATTAGTACTGATTGAAGCTGCAAAGAATGGAAATGAGAAAGAAGTTAAGGAATATGCC CAAGTTTTTCGTGAACATGCCAACAAACTGATTGAGGTTGCCAACCTGGCCTGTTCAATCTCCAACAATG AAGAAGGCGTGAAGCTTGTCCGAATGTCTGCAAGCCAGTTAGAAGCGCTGTGTCCTCAGGTTATCAATGC TGCATTGGCGTTGGCAGCAAAGCCGCAGAGTAAACTGGCCCAAGAGAACATGGATCTTTTTAAAGAGCAA TGGGAAAAGCAAGTCCGTGTTCTCACAGATGCTGTTGATGACATTACTTCCATCGATGACTTCTTGGCTG TCTCAGAGAACCACATTTTAGAAGATGTGAACAAGTGTGTTATTGCTCTCCAAGAGAAAGACGTGGATGG GCTGGATCGCACTGCCGGTGCCATCCGAGGCCGGGCAGCCCGAGTCATTCATGTAGTCACCTCAGAGATG GACAACTACGAGCCAGGAGTTTACACAGAGAAGGTTCTGGAAGCCACCAAGCTCCTCTCCAACACAGTCA TGCCGCGCTTCACTGAGCAGGTGGAAGCAGCTGTGGAAGCCCTCAGCTCGGACCCGGCCCAGCCCATGGA TGAGAATGAGTTCATCGACGCCTCCCGTCTGGTGTACGACGGCATCCGGGACATCCGGAAAGCAGTGCTG ATGATCAGGACCCCCGAGGAGTTGGACGACTCTGACTTCGAGACTGAAGACTTTGATGTCAGAAGCAGGA CCAGTGTCCAGACAGAAGATGACCAGCTGATAGCTGGCCAGAGCGCCCGGGCGATCATGGCTCAGCTTCC TCAGGAGCAAAAAGCAAAGATTGCAGAACAGGTGGCCAGTTTCCAGGAAGAGAAGAGCAAGCTGGATGCT GAAGTGTCCAAGTGGGATGACAGTGGCAATGACATCATTGTGCTGGCCAAGCAGATGTGCATGATCATGA TGGAGATGACCGACTTCACCCGAGGCAAAGGTCCACTCAAAAACACCTCTGACGTGATCAGTGCTGCCAA GAAAATTGCGGAGGCGGGATCCAGGATGGACAAGCTCGGCCGGACCATCGCAGACCATTGCCCAGACTCG GCATGCAAGCAGGACCTGCTGGCCTACCTTCAGCGCATCGCTCTCTACTGCCACCAGCTCAACATCTGCA GCAAAGTCAAGGCTGAAGTACAGAACCTTGGTGGAGAGCTGGTCGTCTCTGGGGTGGACAGCGCCATGTC CCTGATCCAGGCGGCCAAGAACTTGATGAATGCTGTTGTGCAGACAGTGAAGGCGTCCTACGTGGCTTCC ACCAAATACCAGAAGTCACAGGGGATGGCTTCCTTGAACCTTCCTGCTGTGTCATGGAAGATGAAGGCCC CTGAGAAGAAGCCGTTGGTGAAGAGAGAGAAGCAGGATGAGACGCAGACCAAGATTAAACGAGCTTCTCA GAAGAAACACGTGAACCCAGTGCAGGCCCTGAGCGAGTTCAAAGCCATGGACAGCATCTGA
Translation (906 aa):
MTAVHAGNINFKWDPKSLEIRTLAVERLLEPLVTQVTTLVNTNSKGPSNKKRGRSKKAHVLAASVEQATE NFLEKGDKIAKESQFLKEELVVAVEDVRKQGDLMKSAAGEFADDPCSSVKRGNMVRAARALLSAVTRLLI LADMADVYKLLVQLKVVEDGILKLRNAGNEQDLGIQYKALKPEVDKLNIMAAKRQQELKDVGNRDQMAAA RGILQKNVPILYTASQACLQHPDVAAYKANRDLIYKQLQQAVTGISNAAQATASDDAAQHQGGSGGELAY ALNNFDKQIIVDPLSFSEERFRPSLEERLESIISGAALMADSSCTRDDRRERIVAECNAVRQALQDLLSE YMGNAGRKERSDALNSAIDKMTKKTRDLRRQLRKAVMDHVSDSFLETNVPLLVLIEAAKNGNEKEVKEYA QVFREHANKLIEVANLACSISNNEEGVKLVRMSASQLEALCPQVINAALALAAKPQSKLAQENMDLFKEQ WEKQVRVLTDAVDDITSIDDFLAVSENHILEDVNKCVIALQEKDVDGLDRTAGAIRGRAARVIHVVTSEM DNYEPGVYTEKVLEATKLLSNTVMPRFTEQVEAAVEALSSDPAQPMDENEFIDASRLVYDGIRDIRKAVL MIRTPEELDDSDFETEDFDVRSRTSVQTEDDQLIAGQSARAIMAQLPQEQKAKIAEQVASFQEEKSKLDA EVSKWDDSGNDIIVLAKQMCMIMMEMTDFTRGKGPLKNTSDVISAAKKIAEAGSRMDKLGRTIADHCPDS ACKQDLLAYLQRIALYCHQLNICSKVKAEVQNLGGELVVSGVDSAMSLIQAAKNLMNAVVQTVKASYVAS TKYQKSQGMASLNLPAVSWKMKAPEKKPLVKREKQDETQTKIKRASQKKHVNPVQALSEFKAMDSI

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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