CCDS Home FTP Process Releases & Statistics
Collaborators EBI HGNC MGI NCBI
Contact Us email CCDS
Genome Displays Related Resources Gene HomoloGene MANE RefSeq
|
|
Report for CCDS29199.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
29199.1 |
Public |
Mus musculus |
18 |
Pcdh12 |
23 |
108 |
98 |
|
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 29199.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
|
|
EBI |
ENSMUST00000025311.7 |
ENSMUSP00000025311.5 |
Accepted |
alive |
|
|
|
NCBI |
NM_017378.2 |
NP_059074.2 |
Accepted |
alive |
|
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_059074.2 |
1180 |
O55134 |
1180 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 29199.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3543 nt): ATGATGCTACTTCTGCCATTCCTGCTAGGGCTCTTAGGGCCAGGAAGCTACTTGTTCATTTCAGGGGATT GTCAGGAGGTGGCCACTGTCATGGTGAAATTCCAAGTGACAGAGGAAGTGCCGTCTGGCACGGTGATAGG GAAACTGTCCCAAGAACTAAGAGTGGAGGAGAGGCGTGGGAAGGCAGGAGATGCCTTCCAGATTCTGCAG CTGCCTCAGGCACTGCCGGTTCAGATGAACTCTGAGGACGGCCTGCTCAGCACTTCCAGCCGGCTGGATC GGGAGAAGCTATGTCGGCAGGAAGATCCCTGTCTGGTGTCATTTGACGTGCTTGCCACAGGGGCGTCTGC TCTAATTCATGTGGAGATTCAGGTGCTAGACATCAATGACCACCAGCCACAGTTTCCCAAAGACGAGCAG GAACTGGAAATCTCAGAGAGTGCCTCTCTGCACACACGAATCCCCTTGGACAGAGCTCTTGACCAAGACA CGGGTCCTAACAGCTTATATTCCTACTCCCTGTCTCCCAGTGAACACTTTGCCCTGGATGTTATTGTGGG CCCTGATGAGACCAAACATGCAGAGCTTGTGGTGGTGAAGGAGTTGGACAGGGAACTCCACTCATATTTT GATCTGGTGCTGACCGCCTATGACAATGGGAATCCCCCTAAGTCAGGAATCAGCGTGGTCAAGGTCAATG TCCTGGACTCCAATGACAATAGTCCAGTGTTTGCTGAGAGTTCACTAGCACTAGAAATCCCAGAAGACAC TGTTCCTGGTACTCTTCTCATAAACCTGACTGCTACAGATCCCGACCAAGGACCCAATGGGGAGGTAGAG TTCTTCTTTGGCAAGCATGTGTCCCCAGAGGTGATGAACACCTTTGGCATAGATGCCAAGACAGGCCAGA TCATTCTGCGCCAAGCCCTAGATTACGAGAAGAACCCTGCCTATGAGGTGGATGTCCAGGCAAGGGATTT GGGTCCCAATTCCATCCCAGGCCATTGCAAAGTTCTTATCAAAGTTCTGGATGTCAATGACAATGCCCCA AGCATCCTCATCACGTGGGCCTCCCAGACGTCGCTGGTGTCAGAAGATCTTCCCAGGGATAGCTTCATTG CCCTTGTCAGTGCGAATGACTTGGACTCAGGAAACAACGGTCTCGTCCACTGTTGGCTGAATCAAGAGCT GGGCCACTTCAGACTGAAAAGGACTAACGGCAACACGTACATGCTGCTCACCAATGCCACACTGGACAGA GAGCAGTGGCCCATATATACTCTCACTGTGTTTGCCCAAGACCAAGGACCCCAGCCCTTATCAGCTGAGA AGGAGCTCCAAATTCAGGTTAGTGATGTCAATGACAATGCCCCTGTGTTTGAGAAGAGCCGGTACGAGGT CTCCACTTGGGAAAATAACCCACCCTCTCTTCACCTCATCACGCTCAAAGCGCATGATGCTGACTTGGGC AGTAATGGAAAAGTGTCATACCGTATCAAGGACTCCCCCGTTTCTCACTTAGTCATTATTGACTTTGAAA CAGGAGAAGTCACTGCTCAGAGGTCACTGGACTATGAACAGATGGCAGGCTTTGAGTTCCAGGTGATAGC AGAGGACAGAGGGCAACCCCAGCTCGCATCCAGCATCTCGGTGTGGGTTAGCCTCTTGGATGCCAATGAT AATGCCCCAGAAGTGATTCAGCCTGTGCTCAGTGAAGGCAAAGCCACCCTTTCGGTGCTTGTAAATGCCT CCACGGGCCACCTTCTGTTGCCCATTGAGAATCCCAGTGGCATGGATCCAGCAGGTACTGGTATACCACC AAAGGCTACCCACAGCCCCTGGTCTTTCCTTTTGTTAACAATCGTGGCTAGGGATGCAGACTCGGGGGCC AATGGGGAACTCTTCTACAGCATTCAAAGTGGGAATGATGCTCATCTCTTTTTCCTCAGCCCTTCCTTGG GGCAGCTATTCATTAATGTCACCAATGCCAGCAGCCTCATCGGGAGTCAGTGGGACCTGGGGATAGTGGT AGAGGACCAGGGCAGCCCCTCCTTGCAGACCCAAGTTTCATTGAAGGTCGTGTTTGTCACCAGTGTGGAC CACCTAAGGGATTCTGCTCATGAGCCCGGAGTTCTGAGCACACCAGCACTGGCTTTGATCTGCCTGGCTG TACTGCTGGCCATCTTTGGATTGCTCTTAGCCCTGTTCGTGTCCATCTGCAGGACAGAGAGAAAGGATAA TAGGGCCTACAACTGTCGAGAAGCTGAGTCGTCATACCGCCACCAGCCCAAGAGGCCCCAGAAACACATT CAGAAGGCAGATATCCACCTGGTGCCTGTGCTTAGGGCCCACGAGAATGAGACTGATGAAGTCAGGCCAT CTCACAAGGATACCAGCAAGGAGACACTGATGGAGGCAGGCTGGGACTCTTGCCTGCAGGCCCCCTTCCA CCTCACACCAACCCTATACAGGACCCTGCGTAACCAAGGCAACCAGGGAGAACTGGCAGAGAGCCAGGAG GTACTGCAGGACACCTTCAACTTTCTCTTTAACCATCCCAGGCAGAGGAATGCCTCCCGGGAGAACCTAA ACCTTCCTGAGTCCCCACCTGCTGTACGCCAACCACTCTTAAGGCCTCTGAAGGTGCCTGGTAGCCCCAT AGCGAGGGCGACTGGAGACCAAGACAAGGAGGAGGCCCCACAGAGCCCACCAGCGTCCTCTGCAACCCTA AGACGACAGCGGAATTTCAATGGCAAAGTGTCTCCTAGAGGAGAGTCCGGTCCTCATCAGATTCTGAGGA GCCTGGTTAGGCTCTCTGTGGCTGCTTTTGCGGAACGGAACCCGGTGGAGGAGCCTGCTGGGGACTCTCC TCCTGTCCAGCAAATCTCCCAGCTGCTGTCCTTGCTGCACCAGGGCCAATTCCAGCCCAAACCAAACCAC CGAGGAAATAAATACTTGGCCAAGCCCGGCGGCAGCAGCAGGGGTACCATCCCAGACACAGAGGGCCTTG TAGGCCTCAAGCCTAGTGGTCAAGCAGAACCTGACCTGGAAGAAGGGCCCCCGAGCCCGGAGGAGGACCT TTCTGTAAAGCGACTTCTAGAAGAAGAGCTGTCGAGCCTGTTGGACCCTAATACAGGTCTAGCCCTGGAC AAGCTGAGTCCGCCTGACCCAGCCTGGATGGCGAGATTGTCATTGCCCCTCACCACCAATTACCGAGACA ACTTGTCTTCCCCCGATGCTACAACGTCAGAGGAACCGAGAACCTTCCAGACATTCGGCAAGACAGTTGG ACCGGGACCCGAGCTGAGCCCAACAGGCACGCGCCTGGCCAGCACTTTCGTCTCGGAGATGAGCTCTCTG CTGGAAATGTTGTTGGGGCAGCACACGGTACCAGTGGAAGCTGCGTCCGCGGCTTTGCGGAGGCTCTCGG TGTGCGGGAGGACCCTCAGTCTAGACCTAGCCACCAGTGGGGCCTCAGCTTCAGAAGCACAGGGTAGAAA GAAGGCAGCTGAGAGCAGACTTGGCTGTGGCAGGAATCTATGA
Translation (1180 aa): MMLLLPFLLGLLGPGSYLFISGDCQEVATVMVKFQVTEEVPSGTVIGKLSQELRVEERRGKAGDAFQILQ LPQALPVQMNSEDGLLSTSSRLDREKLCRQEDPCLVSFDVLATGASALIHVEIQVLDINDHQPQFPKDEQ ELEISESASLHTRIPLDRALDQDTGPNSLYSYSLSPSEHFALDVIVGPDETKHAELVVVKELDRELHSYF DLVLTAYDNGNPPKSGISVVKVNVLDSNDNSPVFAESSLALEIPEDTVPGTLLINLTATDPDQGPNGEVE FFFGKHVSPEVMNTFGIDAKTGQIILRQALDYEKNPAYEVDVQARDLGPNSIPGHCKVLIKVLDVNDNAP SILITWASQTSLVSEDLPRDSFIALVSANDLDSGNNGLVHCWLNQELGHFRLKRTNGNTYMLLTNATLDR EQWPIYTLTVFAQDQGPQPLSAEKELQIQVSDVNDNAPVFEKSRYEVSTWENNPPSLHLITLKAHDADLG SNGKVSYRIKDSPVSHLVIIDFETGEVTAQRSLDYEQMAGFEFQVIAEDRGQPQLASSISVWVSLLDAND NAPEVIQPVLSEGKATLSVLVNASTGHLLLPIENPSGMDPAGTGIPPKATHSPWSFLLLTIVARDADSGA NGELFYSIQSGNDAHLFFLSPSLGQLFINVTNASSLIGSQWDLGIVVEDQGSPSLQTQVSLKVVFVTSVD HLRDSAHEPGVLSTPALALICLAVLLAIFGLLLALFVSICRTERKDNRAYNCREAESSYRHQPKRPQKHI QKADIHLVPVLRAHENETDEVRPSHKDTSKETLMEAGWDSCLQAPFHLTPTLYRTLRNQGNQGELAESQE VLQDTFNFLFNHPRQRNASRENLNLPESPPAVRQPLLRPLKVPGSPIARATGDQDKEEAPQSPPASSATL RRQRNFNGKVSPRGESGPHQILRSLVRLSVAAFAERNPVEEPAGDSPPVQQISQLLSLLHQGQFQPKPNH RGNKYLAKPGGSSRGTIPDTEGLVGLKPSGQAEPDLEEGPPSPEEDLSVKRLLEEELSSLLDPNTGLALD KLSPPDPAWMARLSLPLTTNYRDNLSSPDATTSEEPRTFQTFGKTVGPGPELSPTGTRLASTFVSEMSSL LEMLLGQHTVPVEAASAALRRLSVCGRTLSLDLATSGASASEAQGRKKAAESRLGCGRNL
|