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Report for CCDS29229.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29229.1 Public Mus musculus 18 Trim36 23 108 98 CCDS HistoryNCBI Gene:28105Re-query CCDS DB by CCDS ID:29229.1Re-query CCDS DB by GeneID:28105See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29229.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037011.5 ENSMUSP00000037978.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037011.5Link to Ensembl Protein Viewer:ENSMUSP00000037978.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000037011Re-query CCDS DB by Protein ID:ENSMUSP00000037978
Original member Current member NCBI NM_178872.4 NP_849203.2 Accepted alive Link to Nucleotide Sequence:NM_178872.4Link to Protein Sequence:NP_849203.2Re-query CCDS DB by Nucleotide ID:NM_178872Re-query CCDS DB by Protein ID:NP_849203Link to BLAST:NP_849203.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849203.2 729 Q80WG7 729 100% 0 0

Chromosomal Locations for CCDS 29229.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 46167413 46167767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46169145 46169442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46172378 46172668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46175548 46175672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46175871 46176124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46178401 46178496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46186122 46186268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46188391 46188716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46196074 46196308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46212302 46212364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2190 nt):
ATGTCGGAATCAGAGGAGATAAGTGAATTTGGCTACATTATGGAATTGCTTGCCAAGGGCAAGGTGACTA
TTAAGAATATCGAAAAGGAGCTTATTTGCCCAGCGTGCAAGGAGCTGTTTACCCACCCGCTGATCCTTCC
CTGCCAGCACAGCGTCTGTCATAAGTGTGTGAAAGAACTTTTACTGTCTCTTGATGACTCGTTCAATGAT
GTGGCGTCAGACAGCTCAAATCAGAGCAGCCCTAGGCTCCGGCTCACCTCCCCTAGCATGGATAAAATCG
ACAAGATTAACAGACCAGGCTGGAAGCGTAATTCACTGACCCCGAGACCAACCACGTTCCCTTGTCCTGG
CTGTGAACATGATGTGGATCTTGGAGAGCGAGGAGTCAGTGGTCTGTTTCGAAATTTCACTTTGGAAACG
ATTGTCGAGAGATACCGGCAGGCCGCTAGGGCAGCCACAGCCATTATGTGTGACCTTTGTAAACCTCCAC
CCCAGGAATCTACAAAGAGCTGCATGGATTGTAGTGCAAGCTACTGCAATGAATGCTTCAAAATTTATCA
TCCCTGGGGCACTGTAAAAGCCCAGCATGAGTATGTGGGCCCCACCACTAATTTCAGACCCAAGGTTCTA
ATGTGCCCAGAACATGAGACAGAGAGAATAAACATGTACTGTGAACTATGCAGAAGGCCAGTTTGCCACC
TCTGTAAGTTGGGTGGGAATCATTCCAATCACCGGGTAACCACCATGAGCAGTGCCTACAAAACCTTAAA
GGAGAAACTTTCAAAAGACATTGATTTCCTTATTGGCAAGGAAAGCCAGGTGAAGAGTCAAATTTCTGAA
CTAAACTTGCTAATGAAAGAGACAGAGTGCAACGGAGAGAGGGCGAAGGAAGAAGCGCTGGCGCATTTTG
AAAAGCTCTTTGAAATCCTGGAAGACAGGAAGTCGTCTGTTCTGAAAGCCATAGATGCCTCTAAGAAACT
AAGACTAGACAAGTTTCACACTCAGATGGAAGAGTACCAAGGCCTTCTAGAGAATAACGGGCTCGTGGGG
TATGCTCAGGAAGTGCTGAAGGAGACGGATCAGTCTTGCTTTGTGCAGACGGCGAAGCAGCTCCATCTCA
GAATACAGAAAGCTACGGAGTCCCTGAAGAGCTTTAGACCTGCAGCCCAGGCTTCTTTTGAAGACTATGT
TGTTAACATATCGAAACAAACAGAGGTGCTTGGAGAGTTGTCCTTTTTCTCCAGTGGCATAGACATTCCT
GAGATCAACGAGGAACAGAGTAAAGTGTATAATAACGCCTTGATAGACTGGCATCATCCAGAAAAGGACA
AAGCCGACAGCTATGTTCTAGAATACCGCAAGATTAATAGAGACGAAGAAATGATATCATGGAATGAGAT
AGAAGTTCACGGCACAAGTAAAGTTGTCTCCAACCTTGAAAGCAACAGTCCCTATGCGTTCCGAGTGAGA
GCTTACAGGGGTTCTATCTGCAGTCCCTGCAGCAGAGAATTGATCCTGCATACTCCTCCAGCTCCAGTTT
TCAGTTTCCTGTTCGATGAGAAGTGTGGCTACAACACTGAGCACCTCTTGCTGAACCTGAAGAGAGACCG
GGTGGAGAGCAGAGCTGGATTTAACGTCCTCCTGGCTGCGGAGCGCATCCAAGTGGGCCATTACACAAGC
TTAGACTACATCATCGGGGATGTCGGAGTCACGAAAGGTAAACACTTCTGGGCCTGCCGCGTGGAACCGT
ATTCATACCTGGTGAAAGTGGGAGTTGCTTCCAGCGACAAACTGCAAGAGTGGCTGCGCTCTCCCCGAGA
TGCAGCTAGTCCAAGATATGAGCAAGACAGTGGACATGACAGTGGAAGCGAGGACGCCTGTTTTGATTCT
TCACAGCCCTTTACATTAGTTACTATAGGCATGAAGAAATTTTTTATACCCAAGTCACCTACTTCCTCTA
ATGAACCAGAAAACAGAGTTCTCCCCATGCCAACGAGTATAGGGATTTTCCTTGACTGTGATAAAGGCAA
AGTGAGCTTCTATGATATGGACCACATGAAATGCCTGTATGAGCGCCAGGTGGACTGTTCGCATACAATG
TATCCGGCCTTTGCCTTGATGGGCAGCGGAGGAATTCAGCTTGAGGAAGCCATCACAGCAAAGTATCTGG
AATATGAAGAGGATGTGTAG

Translation (729 aa):
MSESEEISEFGYIMELLAKGKVTIKNIEKELICPACKELFTHPLILPCQHSVCHKCVKELLLSLDDSFND
VASDSSNQSSPRLRLTSPSMDKIDKINRPGWKRNSLTPRPTTFPCPGCEHDVDLGERGVSGLFRNFTLET
IVERYRQAARAATAIMCDLCKPPPQESTKSCMDCSASYCNECFKIYHPWGTVKAQHEYVGPTTNFRPKVL
MCPEHETERINMYCELCRRPVCHLCKLGGNHSNHRVTTMSSAYKTLKEKLSKDIDFLIGKESQVKSQISE
LNLLMKETECNGERAKEEALAHFEKLFEILEDRKSSVLKAIDASKKLRLDKFHTQMEEYQGLLENNGLVG
YAQEVLKETDQSCFVQTAKQLHLRIQKATESLKSFRPAAQASFEDYVVNISKQTEVLGELSFFSSGIDIP
EINEEQSKVYNNALIDWHHPEKDKADSYVLEYRKINRDEEMISWNEIEVHGTSKVVSNLESNSPYAFRVR
AYRGSICSPCSRELILHTPPAPVFSFLFDEKCGYNTEHLLLNLKRDRVESRAGFNVLLAAERIQVGHYTS
LDYIIGDVGVTKGKHFWACRVEPYSYLVKVGVASSDKLQEWLRSPRDAASPRYEQDSGHDSGSEDACFDS
SQPFTLVTIGMKKFFIPKSPTSSNEPENRVLPMPTSIGIFLDCDKGKVSFYDMDHMKCLYERQVDCSHTM
YPAFALMGSGGIQLEEAITAKYLEYEEDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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