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Report for CCDS29304.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29304.1 Public Mus musculus 18 Atp8b1 23 108 98 CCDS HistoryNCBI Gene:54670Re-query CCDS DB by CCDS ID:29304.1Re-query CCDS DB by GeneID:54670See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29304.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025482.9 ENSMUSP00000025482.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025482.9Link to Ensembl Protein Viewer:ENSMUSP00000025482.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000025482Re-query CCDS DB by Protein ID:ENSMUSP00000025482
Original member Current member NCBI NM_001001488.3 NP_001001488.2 Accepted alive Link to Nucleotide Sequence:NM_001001488.3Link to Protein Sequence:NP_001001488.2Re-query CCDS DB by Nucleotide ID:NM_001001488Re-query CCDS DB by Protein ID:NP_001001488Link to BLAST:NP_001001488.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001488.2 1251 Q148W0 1251 100% 0 0

Chromosomal Locations for CCDS 29304.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 64531340 64531564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64533594 64533724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64538551 64538689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64539031 64539276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64540285 64540368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64541278 64541501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64545117 64545405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64545991 64546123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64550371 64550446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64551840 64551951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64553014 64553178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64555114 64555226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64556841 64557029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64561580 64561736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64562170 64562213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64564343 64564551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64568066 64568256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64571017 64571105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64571383 64571541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64571659 64571741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64573239 64573309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64573487 64573559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64577411 64577472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64577588 64577686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64579093 64579206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64581901 64581998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64605198 64605378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3756 nt):
ATGAGCACAGAAAGAGACTCGGAAACAACATTTGATGAGGAGTCTCAGCCCAACGATGAAGTGGTCCCCT
ACAGTGATGATGAAACTGAAGACGAACTTGAAGATCAGGGGTCCACGGTTGAACCAGAACAGAATCGTGT
CAACAGAGAAGCTGAGAAGAAGAGAGAGACATTCCGGAAAGATTGCACGTGGCAAGTCAAAGCAAATGAC
CGAAAGTTCCACGAACAACCTCATTTCATGAACACCAAGTTCTTTTGTATTAAGGAGAGCAAATATGCGA
GTAATGCAATTAAAACATACAAGTACAATGGATTTACCTTTCTACCCATGAATTTGTTTGAGCAGTTTAA
GAGGGCAGCCAACTTCTATTTCCTCATCCTCCTGATCCTGCAGGCAATTCCTCAAATCTCCACCCTGGCA
TGGTATACCACACTTGTACCTCTGCTTTTGGTGCTGGGCATCACGGCCATCAAAGACCTGGTAGATGATG
TGGCTCGTCATAAAATGGACAAGGAAATCAACAATAGGACGTGTGAAGTCATTAAGGATGGCAGGTTCAA
AATCATCAAGTGGAAAGATATCCAGGTTGGAGATGTCATCCGCCTGAAGAAGAATGATTTTATTCCAGCT
GACATCCTGCTGTTGTCCAGTTCAGAGCCTAACAGCCTCTGCTATGTAGAAACGGCTGAGCTCGACGGAG
AAACCAATTTGAAGTTCAAAATGGCCCTGGAAATCACGGACCAATATCTCCAAATAGAAGATAACTTGGC
AACATTTGATGGTTTCATCGAATGTGAAGAACCAAACAATCGGTTAGACAAGTTCACAGGAACGCTGTTT
TGGAAGAACCAAAGCTTTCCTTTGGATGCTGATAAAATCCTGTTACGAGGTTGTGTGATAAGGAACACCG
ATGTCTGCCATGGCCTGGTCATTTTTGCAGGTGCTGACACAAAGATAATGAAGAATAGTGGGAAAACCAG
ATTTAAAAGAACCAAAATTGATTACTTGATGAACTACATGGTGTACACGATCTTTATTGTTCTCATCCTG
GTTTCTGCCGGCCTCGCCATTGGCCACGCCTATTGGGAAGCCCAAGTTGGCAATTATTCCTGGTACCTCT
ATGATGGAGAAAATGCCACACCGTCCTACCGGGGATTCCTGAATTTCTGGGGCTACATCATTGTATTGAA
CACCATGGTGCCCATTTCTCTCTATGTCAGTGTGGAAGTGATCCGTCTGGGACAGAGTCATTTCATCAAC
TGGGACCTGCAGATGTACTATGCTGAGAAGGACACTCCTGCCAAGGCGAGGACCACCACCTTGAATGAGC
AGCTAGGGCAGATTCATTACATCTTCTCTGATAAGACGGGGACACTCACGCAAAATATCATGACCTTCAA
AAAGTGCTGCATTAACGGGACTATCTATGGAGACCATCGAGATGCTTCTCAACACAGCCACAGCAAAATC
GAGCTAGTGGACTTTAGCTGGAATACATTTGCCGATGGAAAGCTTGCATTTTATGACCATTACCTTATCG
AGCAAATACAGTCAGGGAAAGAGCCAGAAGTACGACAGTTCTTCTTTTTGCTTTCGATTTGCCATACGGT
CATGGTGGACAGAATTGATGGTCAGATCAACTACCAGGCGGCTTCTCCTGATGAAGGCGCCCTGGTAAAC
GCCGCCAGGAACTTCGGCTTTGCCTTTCTCGCCCGGACGCAGAACACCATCACCGTCAGCGAACTGGGCT
CAGAGAGGACCTACAACGTCCTTGCCATTTTGGATTTCAACAGCGACCGAAAGCGGATGTCTATCATCGT
GAGGACCCCAGAAGGTAGTATCCGGCTGTACTGTAAAGGTGCTGACACCGTGATTTATGAACGGCTCCAT
CGGATGAATCCTACGAAGCAAGAAACACAGGATGCCCTGGATATCTTTGCAAGTGAGACTCTCAGGACCC
TGTGCCTGTGCTACAAGGAAATTGAAGAAAAAGAATTTACAGAATGGAATAATAAGTTTATGGCCGCCAG
CGTGGCCTCAAGCAACCGAGACGAAGCGTTGGATAAAGTGTACGAGGAGATTGAGAAAGACTTGATTCTC
TTGGGAGCTACTGCTATTGAAGACAAGCTACAGGATGGAGTCCCAGAAACCATTTCAAAACTTGCAAAAG
CTGACATTAAGATCTGGGTACTCACCGGAGACAAAAAGGAAACTGCAGAAAACATAGGTTTTGCCTGTGA
ACTCTTGACGGAAGACACTACTATCTGCTACGGAGAGGACATAAACTCTCTTCTTCACACCAGGATGGAG
AATCAGAGAAACAGAGGTGGAGTCTCTGCGAAATTTGCACCTCCTGTGTATGAACCCTTTTTTCCACCTG
GAGAAAACCGTGCCTTAATCATCACTGGCTCCTGGCTGAATGAAATCCTTCTAGAGAAGAAGACCAAGAG
AAGTAAGATCCTGAAGCTGAAGTTCCCAAGGACAGAGGAGGAGAGGCGGATGCGGAGCCAGAGCCGGAGA
CGGCTGGAAGAGAAGAAAGAGCAGCGGCAAAAGAACTTCGTGGACCTGGCCTGCGAGTGCAGCGCCGTCA
TCTGCTGCCGCGTCACGCCCAAGCAGAAGGCCATGGTGGTGGACCTGGTGAAGAGGTACAAGAAAGCCAT
CACCCTGGCCATCGGAGACGGGGCCAATGATGTCAACATGATCAAAACTGCCCACATTGGTGTTGGAATA
AGTGGACAAGAAGGGATGCAAGCTGTCATGTCCAGTGACTATTCTTTTGCTCAGTTCAGATATCTGCAGC
GGTTGCTGCTGGTCCACGGCCGGTGGTCTTACATAAGGATGTGCAAGTTCCTACGATACTTCTTTTACAA
GAACTTTGCCTTTACTTTAGTTCATTTCTGGTACTCCTTCTTCAATGGCTACTCAGCCCAGACGGCGTAT
GAGGATTGGTTTATCACCCTCTACAACGTGCTGTACTCCAGTTTGCCTGTGCTCCTCATGGGGCTGCTGG
ATCAGGACGTGAGTGACAAGCTGAGCCTCCGATTCCCTGGGCTGTATGTAGTGGGGCAGAGGGACTTGCT
GTTCAACTATAAGAGATTCTTTGTCAGTTTGCTGCATGGGGTCTTAACCTCAATGGTCCTCTTCTTCATA
CCGCTTGGTGCTTATCTGCAAACAGTGGGACAGGATGGGGAGGCGCCTTCAGACTACCAGTCCTTCGCCG
TCACGGTGGCCTCCGCTCTAGTGATAACGGTCAACTTCCAGATTGGCTTGGATACTTCATACTGGACTTT
TGTGAATGCCTTTTCAATTTTCGGCAGCATCGCACTGTACTTCGGCATCATGTTTGATTTCCACAGTGCT
GGGATACACGTTCTCTTTCCGTCCGCATTTCAGTTCACAGGTACAGCTTCCAATGCCCTGAGACAGCCAT
ACATCTGGCTGACCATCATCCTGACGGTTGCCGTGTGCTTACTACCTGTCGTCGCCATCCGTTTCCTGTC
CATGACCATTTGGCCCTCAGAAAGTGATAAGATCCAGAAGCATCGAAAGCGATTGAAGGCTGAAGAGCAG
TGGAAACGGCGGCAGAGCGTGTTCCGGAGGGGAGTATCTTCCAGGCGCTCAGCCTATGCCTTTTCGCATC
AGAGAGGCTACGCAGACCTCATCTCCTCTGGCCGCAGCATCCGCAAGAAGCGCTCGCCCCTGGATGCCAT
CATCGCGGATGGCACGGCTGAGTACCGGCGCACAGTGGAGAGCTGA

Translation (1251 aa):
MSTERDSETTFDEESQPNDEVVPYSDDETEDELEDQGSTVEPEQNRVNREAEKKRETFRKDCTWQVKAND
RKFHEQPHFMNTKFFCIKESKYASNAIKTYKYNGFTFLPMNLFEQFKRAANFYFLILLILQAIPQISTLA
WYTTLVPLLLVLGITAIKDLVDDVARHKMDKEINNRTCEVIKDGRFKIIKWKDIQVGDVIRLKKNDFIPA
DILLLSSSEPNSLCYVETAELDGETNLKFKMALEITDQYLQIEDNLATFDGFIECEEPNNRLDKFTGTLF
WKNQSFPLDADKILLRGCVIRNTDVCHGLVIFAGADTKIMKNSGKTRFKRTKIDYLMNYMVYTIFIVLIL
VSAGLAIGHAYWEAQVGNYSWYLYDGENATPSYRGFLNFWGYIIVLNTMVPISLYVSVEVIRLGQSHFIN
WDLQMYYAEKDTPAKARTTTLNEQLGQIHYIFSDKTGTLTQNIMTFKKCCINGTIYGDHRDASQHSHSKI
ELVDFSWNTFADGKLAFYDHYLIEQIQSGKEPEVRQFFFLLSICHTVMVDRIDGQINYQAASPDEGALVN
AARNFGFAFLARTQNTITVSELGSERTYNVLAILDFNSDRKRMSIIVRTPEGSIRLYCKGADTVIYERLH
RMNPTKQETQDALDIFASETLRTLCLCYKEIEEKEFTEWNNKFMAASVASSNRDEALDKVYEEIEKDLIL
LGATAIEDKLQDGVPETISKLAKADIKIWVLTGDKKETAENIGFACELLTEDTTICYGEDINSLLHTRME
NQRNRGGVSAKFAPPVYEPFFPPGENRALIITGSWLNEILLEKKTKRSKILKLKFPRTEEERRMRSQSRR
RLEEKKEQRQKNFVDLACECSAVICCRVTPKQKAMVVDLVKRYKKAITLAIGDGANDVNMIKTAHIGVGI
SGQEGMQAVMSSDYSFAQFRYLQRLLLVHGRWSYIRMCKFLRYFFYKNFAFTLVHFWYSFFNGYSAQTAY
EDWFITLYNVLYSSLPVLLMGLLDQDVSDKLSLRFPGLYVVGQRDLLFNYKRFFVSLLHGVLTSMVLFFI
PLGAYLQTVGQDGEAPSDYQSFAVTVASALVITVNFQIGLDTSYWTFVNAFSIFGSIALYFGIMFDFHSA
GIHVLFPSAFQFTGTASNALRQPYIWLTIILTVAVCLLPVVAIRFLSMTIWPSESDKIQKHRKRLKAEEQ
WKRRQSVFRRGVSSRRSAYAFSHQRGYADLISSGRSIRKKRSPLDAIIADGTAEYRRTVES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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