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Report for CCDS2940.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2940.1 Public Homo sapiens 3 IMPG2 24 110 108 CCDS HistoryNCBI Gene:50939Re-query CCDS DB by CCDS ID:2940.1Re-query CCDS DB by GeneID:50939See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2940.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000193391.8 ENSP00000193391.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000193391.8Link to Ensembl Protein Viewer:ENSP00000193391.6Re-query CCDS DB by Nucleotide ID:ENST00000193391Re-query CCDS DB by Protein ID:ENSP00000193391
Original member Current member NCBI NM_016247.4 NP_057331.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016247.4Link to Protein Sequence:NP_057331.2Re-query CCDS DB by Nucleotide ID:NM_016247Re-query CCDS DB by Protein ID:NP_057331Link to BLAST:NP_057331.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057331.2 1241 Q9BZV3 1241 100% 0 0

Chromosomal Locations for CCDS 2940.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 101226969 101226981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101228797 101228876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101229380 101229590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101230957 101231145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101232781 101232991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101242688 101242907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101243529 101244787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101245802 101246105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101253696 101253781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101257529 101257773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101267511 101267531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101269515 101269573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101273581 101273742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101275663 101275745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101276664 101276713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101291479 101291510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101304146 101304312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101319584 101319832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 101320288 101320372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3726 nt):
ATGATTATGTTTCCTCTTTTTGGGAAGATTTCTCTGGGTATTTTGATATTTGTCCTGATAGAAGGAGACT
TTCCATCATTAACAGCACAAACCTACTTATCTATAGAGGAGATCCAAGAACCCAAGAGTGCAGTTTCTTT
TCTCCTGCCTGAAGAATCAACAGACCTTTCTCTAGCTACCAAAAAGAAACAGCCTCTGGACCGCAGAGAA
ACTGAAAGACAGTGGTTAATCAGAAGGCGGAGATCTATTCTGTTTCCTAATGGAGTGAAAATCTGCCCAG
ATGAAAGTGTTGCAGAGGCTGTGGCAAATCATGTGAAGTATTTTAAAGTCCGAGTGTGTCAGGAAGCTGT
CTGGGAAGCCTTCAGGACTTTTTGGGATCGACTTCCTGGGCGTGAGGAATATCATTACTGGATGAATTTG
TGTGAGGATGGAGTCACAAGTATATTTGAAATGGGCACAAATTTTAGTGAATCTGTGGAACATAGAAGCT
TAATCATGAAGAAACTGACTTATGCAAAGGAAACTGTAAGCAGCTCTGAACTGTCTTCTCCAGTTCCTGT
TGGTGATACTTCAACATTGGGAGACACTACTCTCAGTGTTCCACATCCAGAGGTGGACGCCTATGAAGGT
GCCTCAGAGAGCAGCTTGGAAAGGCCAGAGGAGAGTATTAGCAATGAAATTGAGAATGTGATAGAAGAAG
CCACAAAACCAGCAGGTGAACAGATTGCAGAATTCAGTATCCACCTTTTGGGGAAGCAGTACAGGGAAGA
ACTACAGGATTCCTCCAGCTTTCACCACCAGCACCTTGAAGAAGAATTTATTTCAGAGGTTGAAAATGCA
TTTACTGGGTTACCAGGCTACAAGGAAATTCGTGTACTTGAATTTAGGTCCCCCAAGGAAAATGACAGTG
GCGTAGATGTTTACTATGCAGTTACCTTCAATGGTGAGGCCATCAGCAATACCACCTGGGACCTCATTAG
CCTTCACTCCAACAAGGTGGAAAACCATGGCCTTGTGGAACTGGATGATAAACCCACTGTTGTTTATACA
ATCAGTAACTTCAGAGATTATATTGCTGAGACATTGCAGCAGAATTTTTTGCTGGGGAACTCTTCCTTGA
ATCCAGATCCTGATTCCCTGCAGCTTATCAATGTGAGAGGAGTTTTGCGTCACCAAACTGAAGATCTAGT
TTGGAACACCCAAAGTTCAAGTCTTCAGGCAACGCCGTCATCTATTCTGGATAATACCTTTCAAGCTGCA
TGGCCCTCAGCAGATGAATCCATCACCAGCAGTATTCCACCACTTGATTTCAGCTCTGGTCCTCCCTCAG
CCACTGGCAGGGAACTCTGGTCAGAAAGTCCTTTGGGTGATTTAGTGTCTACACACAAATTAGCCTTTCC
CTCGAAGATGGGCCTCAGCTCTTCCCCAGAGGTTTTAGAGGTTAGCAGCTTGACTCTTCATTCTGTCACC
CCGGCAGTGCTTCAGACTGGCTTGCCTGTGGCTTCTGAGGAAAGGACTTCTGGATCTCACTTGGTAGAAG
ATGGATTAGCCAATGTTGAAGAGTCAGAAGATTTTCTTTCTATTGATTCATTGCCTTCAAGTTCATTCAC
TCAACCTGTGCCAAAAGAAACAATACCATCCATGGAAGACTCTGATGTGTCCTTAACATCTTCACCATAT
CTGACCTCTTCTATACCTTTTGGCTTGGACTCCTTGACCTCCAAAGTCAAAGACCAATTAAAAGTGAGCC
CTTTCCTGCCAGATGCATCCATGGAAAAAGAGTTAATATTTGACGGTGGTTTAGGTTCAGGGTCTGGGCA
AAAGGTAGATCTGATTACTTGGCCATGGAGTGAGACTTCATCAGAGAAGAGCGCTGAACCACTGTCCAAG
CCGTGGCTTGAAGATGATGATTCACTTTTGCCAGCTGAGATTGAAGACAAGAAACTAGTTTTAGTTGACA
AAATGGATTCCACAGACCAAATTAGTAAGCACTCAAAATATGAACATGATGACAGATCCACACACTTTCC
AGAGGAAGAGCCTCTTAGTGGGCCTGCTGTGCCCATCTTCGCAGATACTGCAGCTGAATCTGCGTCTCTA
ACCCTCCCCAAGCACATATCAGAAGTACCTGGTGTTGATGATTACTCAGTTACCAAAGCACCTCTTATAC
TGACATCTGTAGCAATCTCTGCCTCTACTGATAAATCAGATCAGGCAGATGCCATCCTAAGGGAGGATAT
GGAACAAATTACTGAGTCATCCAACTATGAATGGTTTGACAGTGAGGTTTCAATGGTAAAGCCAGATATG
CAAACTTTGTGGACTATATTGCCAGAATCAGAGAGAGTTTGGACAAGAACTTCTTCCCTAGAGAAATTGT
CCAGAGACATATTGGCAAGTACACCACAGAGTGCTGACAGGCTCTGGTTATCTGTGACACAGTCTACCAA
ATTGCCTCCAACCACAATCTCCACCCTGCTAGAGGATGAAGTAATTATGGGTGTACAGGATATTTCGTTA
GAACTGGACCGGATAGGCACAGATTACTATCAGCCTGAGCAAGTCCAAGAGCAAAATGGCAAGGTTGGTA
GTTATGTGGAAATGTCAACAAGTGTTCACTCCACAGAGATGGTTAGTGTGGCTTGGCCCACAGAAGGAGG
AGATGACTTGAGTTATACCCAGACTTCAGGAGCTTTGGTGGTTTTCTTCAGCCTCCGAGTGACTAACATG
ATGTTTTCAGAAGATCTGTTTAATAAAAACTCCTTGGAGTATAAAGCCCTGGAGCAAAGATTCTTAGAAT
TGCTGGTTCCCTATCTCCAGTCAAATCTCACGGGGTTCCAGAACTTAGAAATCCTCAACTTCAGAAATGG
CAGCATTGTGGTGAACAGTCGAATGAAGTTTGCCAATTCTGTCCCTCCTAACGTCAACAATGCGGTGTAC
ATGATTCTGGAAGACTTTTGTACCACTGCCTACAATACCATGAACTTGGCTATTGATAAATACTCTCTTG
ATGTGGAATCAGGTGATGAAGCCAACCCTTGCAAGTTTCAGGCCTGTAATGAATTTTCAGAGTGTCTGGT
CAACCCCTGGAGTGGAGAAGCAAAGTGCAGATGCTTCCCTGGATACCTGAGTGTGGAAGAACGGCCCTGT
CAGAGTCTCTGTGACCTACAGCCTGACTTCTGCTTGAATGATGGAAAGTGTGACATTATGCCTGGGCACG
GGGCCATTTGTAGGTGCCGGGTGGGTGAGAACTGGTGGTACCGAGGCAAGCACTGTGAGGAATTTGTGTC
TGAGCCCGTGATCATAGGCATCACTATTGCCTCCGTGGTTGGACTTCTTGTCATCTTTTCTGCTATCATC
TACTTCTTCATCAGGACTCTCCAAGCACACCATGACAGGAGTGAAAGAGAGAGTCCCTTCAGTGGCTCCA
GCAGGCAGCCTGACAGCCTCTCATCTATTGAGAATGCTGTGAAGTACAACCCCGTGTATGAAAGTCACAG
GGCTGGATGTGAGAAGTATGAGGGACCCTATCCTCAGCATCCCTTCTACAGCTCTGCTAGCGGAGACGTG
ATTGGTGGGCTGAGCAGAGAAGAAATCAGACAGATGTATGAGAGCAGTGAGCTTTCCAGAGAGGAAATTC
AAGAGAGAATGAGAGTTTTGGAACTGTATGCCAATGATCCTGAGTTTGCAGCTTTTGTGAGAGAGCAACA
AGTGGAAGAGGTTTAA

Translation (1241 aa):
MIMFPLFGKISLGILIFVLIEGDFPSLTAQTYLSIEEIQEPKSAVSFLLPEESTDLSLATKKKQPLDRRE
TERQWLIRRRRSILFPNGVKICPDESVAEAVANHVKYFKVRVCQEAVWEAFRTFWDRLPGREEYHYWMNL
CEDGVTSIFEMGTNFSESVEHRSLIMKKLTYAKETVSSSELSSPVPVGDTSTLGDTTLSVPHPEVDAYEG
ASESSLERPEESISNEIENVIEEATKPAGEQIAEFSIHLLGKQYREELQDSSSFHHQHLEEEFISEVENA
FTGLPGYKEIRVLEFRSPKENDSGVDVYYAVTFNGEAISNTTWDLISLHSNKVENHGLVELDDKPTVVYT
ISNFRDYIAETLQQNFLLGNSSLNPDPDSLQLINVRGVLRHQTEDLVWNTQSSSLQATPSSILDNTFQAA
WPSADESITSSIPPLDFSSGPPSATGRELWSESPLGDLVSTHKLAFPSKMGLSSSPEVLEVSSLTLHSVT
PAVLQTGLPVASEERTSGSHLVEDGLANVEESEDFLSIDSLPSSSFTQPVPKETIPSMEDSDVSLTSSPY
LTSSIPFGLDSLTSKVKDQLKVSPFLPDASMEKELIFDGGLGSGSGQKVDLITWPWSETSSEKSAEPLSK
PWLEDDDSLLPAEIEDKKLVLVDKMDSTDQISKHSKYEHDDRSTHFPEEEPLSGPAVPIFADTAAESASL
TLPKHISEVPGVDDYSVTKAPLILTSVAISASTDKSDQADAILREDMEQITESSNYEWFDSEVSMVKPDM
QTLWTILPESERVWTRTSSLEKLSRDILASTPQSADRLWLSVTQSTKLPPTTISTLLEDEVIMGVQDISL
ELDRIGTDYYQPEQVQEQNGKVGSYVEMSTSVHSTEMVSVAWPTEGGDDLSYTQTSGALVVFFSLRVTNM
MFSEDLFNKNSLEYKALEQRFLELLVPYLQSNLTGFQNLEILNFRNGSIVVNSRMKFANSVPPNVNNAVY
MILEDFCTTAYNTMNLAIDKYSLDVESGDEANPCKFQACNEFSECLVNPWSGEAKCRCFPGYLSVEERPC
QSLCDLQPDFCLNDGKCDIMPGHGAICRCRVGENWWYRGKHCEEFVSEPVIIGITIASVVGLLVIFSAII
YFFIRTLQAHHDRSERESPFSGSSRQPDSLSSIENAVKYNPVYESHRAGCEKYEGPYPQHPFYSSASGDV
IGGLSREEIRQMYESSELSREEIQERMRVLELYANDPEFAAFVREQQVEEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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