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Report for CCDS2962.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
2962.1 |
Public |
Homo sapiens |
3 |
PHLDB2 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:90102](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:2962.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:90102](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 3 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 2962.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000412622.5 |
ENSP00000405292.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000412622.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000405292.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000412622](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000405292](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000481953.5 |
ENSP00000418319.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000481953.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000418319.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000481953](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000418319](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_145753.2 |
NP_665696.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_145753.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_665696.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_145753](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_665696](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_665696.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_665696.1 |
1210 |
Q86SQ0-2 |
1210 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 2962.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3633 nt): ATGGAAGAGCATAGCTACATACAAAAGGAGCTAGATTTACAAAATGGTAGCTTAGAGGAAGACTCTGTGG TGCATTCTGTTGAGAACGATTCCCAAAACATGATGGAGAGCCTCAGCCCAAAGAAATACTCTTCCAGTCT GAGATTTAAAGCCAATGGAGACTATTCTGGCTCCTATTTAACCCTCTCACAACCTGTGCCTGCAAAGAGA AGCCCTTCTCCTTTGGGAACCAGTGTCAGAAGCAGCCCCTCCTTAGCCAAAATCCAGGGAAGCAAGCAGT TCTCTTATGATGGAACTGACAAAAATATTCCTATGAAACCTCCAACTCCTTTACTCAACACTACATCCTC CCTCAGTGGATATCCACTTGGAAGAGCAGACTTTGATCATTATACTGGCCGGGACAGTGAAAGGGCCTTG AGGCTCTCAGAGAAGCCTCCCTATTCCAAATATAGCTCAAGGCATAAATCGCATGACAATGTCTACTCTC TTGGAGGGCTGGAAGGTCGGAAGGCATCTGGCTCGCTCCTGGCCATGTGGAATGGAAGTTCCCTGAGTGA TGCTGGCCCGCCTCCTATCAGCAGATCGGGAGCCGCAAGCATGCCTTCAAGCCCAAAGCAAGCCAGGAAA ATGAGCATTCAGGACAGCCTGGCGCTTCAACCCAAGTTAACTAGACACAAGGAGCTTGCATCTGAAAACA TCAATTTGAGAACTAGGAAGTACTCCAGCAGCAGCCTGAGTCACATGGGAGCCTACAGCCGATCACTTCC CAGGTTGTACAGAGCCACAGAGAACCAGCTGACACCTCTCAGCTTGCCTCCAAGAAACTCTCTGGGCAAT TCCAAACGAACAAAACTTGGGGAAAAGGATCTACCTCATAGCGTAATAGACAATGACAATTACCTTAATT TTTCTTCTTTGAGCTCAGGGGCTTTACCCTATAAAACCTCTGCTTCTGAAGGCAATCCTTATGTAAGTTC TACCCTCAGTGTCCCTGCCAGTCCACGAGTGGCTCGGAAGATGCTTCTGGCCTCCACCTCCTCCTGTGCC TCTGATGACTTTGATCAGGCTTCATATGTGGGGACAAACCCGAGTCATTCACTTCTTGCTGGAGAGTCAG ACAGAGTTTTTGCGACCAGGAGGAACTTCTCTTGTGGATCTGTGGAATTTGATGAGGCAGATTTGGAAAG CCTCAGACAGGCCTCAGGAACCCCCCAGCCTGCCCTTCGGGAACGGAAAAGCAGTATTAGCTCCATTTCA GGACGTGATGACCTGATGGATTATCACCGGCGGCAGAGGGAGGAAAGACTCAGGGAGCAGGAAATGGAGC GATTGGAGAGACAGCGTCTGGAGACCATCCTCAGTCTCTGTGCTGAATACACAAAGCCTGACAGTCGCTT ATCTACTGGGACCACCGTGGAAGATGTGCAGAAAATCAACAAGGAGCTTGAGAAGCTGCAGCTCTCTGAT GAGGAGTCTGTGTTTGAGGAAGCCCTCATGAGCCCTGACACAAGATACAGGTGCCACCGGAAAGACTCCC TCCCTGATGCAGACTTGGCAAGCTGTGGGAGTCTCAGTCAGAGCAGTGCCAGCTTCTTTACCCCCAGGAG CACCAGGAATGATGAACTACTCAGTGACCTCACCCGGACTCCTCCACCACCATCCTCCACCTTTCCGAAA GCTTCCAGCGAGTCCTCTTATCTAAGTATCCTACCAAAGACCCCAGAGGGTATAAGTGAAGAACAGAGAT CTCAGGAGTTGGCTGCAATGGAAGAAACCCGGATAGTCATTCTGAACAACCTCGAGGAACTTAAGCAAAA AATCAAAGACATAAATGATCAGATGGATGAGTCTTTCAGAGAGTTGGATATGGAATGTGCTCTTTTGGAT GGAGAACAGAAATCTGAAACAACTGAACTTATGAAGGAGAAGGAGATTTTGGATCATCTAAACCGGAAAA TAGCTGAACTGGAAAAGAACATTGTTGGTGAAAAGACCAAGGATGCTGACCTGTTGGATGTTGAAAGCAA ACACTTTGAAGACCTGGAGTTCCAGCAGCTTGAACATGAGAGCCGTCTAGATGAAGAAAAGGAGAACTTG ACTCAACAGCTCCTGCGTGAAGTTGCTGAATATCAACGGAACATCGTTTCTAGAAAGGAAAAAATTTCTG CATTGAAAAAGCAAGCCAATCACATTGTTCAGCAGGCTCAGAGAGAGCAAGATCATTTTGTGAAAGAAAA GAATAATTTAATAATGATGTTGCAAAGAGAAAAGGAGAATCTTTGTAATTTGGAAAAGAAATACTCCAGC CTCTCTGGGGGGAAAGGGTTTCCCGTTAACCCCAATACTTTAAAAGAGGGCTATATCAGTGTAAATGAGA TTAATGAGCCGTGTGGCAATTCCACGAATCTATCCCCTTCCACTCAGTTTCCTGCTGATGCTGATGCTGT TGCCACTGAGCCTGCCACAGCTGTGCTGGCGAGCCAGCCACAGAGTAAAGAGCACTTTAGAAGTCTGGAA GAAAGGAAAAAACAGCATAAAGAAGGCCTCTATCTGAGTGATACTTTGCCTCGAAAGAAAACCACATCTT CCATCTCCCCACATTTCAGCAGTGCTACTATGGGGAGAAGCATCACCCCAAAGGCCCATCTGCCCCTAGG ACAGAGTAACAGCTGTGGAAGTGTGCTCCCTCCCTCACTGGCAGCCATGGCCAAAGACTCAGAATCTCGG AGGATGCTCAGAGGTTATAATCACCAACAGATGAGTGAAGGACACAGGCAGAAATCTGAATTTTATAACC GCACAGCATCTGAATCAAATGTCTACTTGAATAGTTTCCATTATCCAGATCACAGCTACAAGGACCAGGC CTTTGATACTCTGAGCCTCGATAGCTCTGATAGCATGGAGACCAGCATCTCTGCTTGCTCACCAGACAAC ATCTCTAGTGCCAGCACTTCAAATATTGCTAGAATAGAAGAAATGGAGAGACTTTTGAAGCAGGCTCATG CAGAAAAGACGCGGCTGCTCGAATCCAGGGAACGGGAAATGGAAGCCAAAAAACGAGCCCTGGAAGAAGA AAAACGACGCCGGGAAATCCTGGAAAAACGATTACAGGAAGAAACTAGCCAGAGGCAGAAGTTAATAGAA AAGGAAGTAAAAATAAGGGAGAGACAAAGGGCACAGGCTCGTCCTTTGACACGCTACCTGCCTGTCCGGA AGGAAGACTTTGATTTGCGGAGCCATGTAGAGACTGCTGGCCACAATATTGACACCTGTTACCATGTATC AATCACAGAGAAGACCTGCCGAGGATTCCTCATCAAAATGGGTGGGAAAATTAAAACGTGGAAAAAACGT TGGTTTGTTTTTGATCGGAACAAGCGAACATTCTCTTATTATGCAGACAAGCATGAAACTAAATTGAAAG GAGTAATATACTTTCAAGCCATTGAAGAAGTCTATTATGATCACCTCAAGAATGCTAATAAGAGTCCTAA TCCGTTACTCACCTTTAGCGTCAAGACTCATGACAGAATCTATTATATGGTAGCCCCATCGCCAGAAGCC ATGCGGATCTGGATGGATGTTATAGTTACGGGGGCAGAAGGTTACACTCACTTCTTGTTGTAG
Translation (1210 aa): MEEHSYIQKELDLQNGSLEEDSVVHSVENDSQNMMESLSPKKYSSSLRFKANGDYSGSYLTLSQPVPAKR SPSPLGTSVRSSPSLAKIQGSKQFSYDGTDKNIPMKPPTPLLNTTSSLSGYPLGRADFDHYTGRDSERAL RLSEKPPYSKYSSRHKSHDNVYSLGGLEGRKASGSLLAMWNGSSLSDAGPPPISRSGAASMPSSPKQARK MSIQDSLALQPKLTRHKELASENINLRTRKYSSSSLSHMGAYSRSLPRLYRATENQLTPLSLPPRNSLGN SKRTKLGEKDLPHSVIDNDNYLNFSSLSSGALPYKTSASEGNPYVSSTLSVPASPRVARKMLLASTSSCA SDDFDQASYVGTNPSHSLLAGESDRVFATRRNFSCGSVEFDEADLESLRQASGTPQPALRERKSSISSIS GRDDLMDYHRRQREERLREQEMERLERQRLETILSLCAEYTKPDSRLSTGTTVEDVQKINKELEKLQLSD EESVFEEALMSPDTRYRCHRKDSLPDADLASCGSLSQSSASFFTPRSTRNDELLSDLTRTPPPPSSTFPK ASSESSYLSILPKTPEGISEEQRSQELAAMEETRIVILNNLEELKQKIKDINDQMDESFRELDMECALLD GEQKSETTELMKEKEILDHLNRKIAELEKNIVGEKTKDADLLDVESKHFEDLEFQQLEHESRLDEEKENL TQQLLREVAEYQRNIVSRKEKISALKKQANHIVQQAQREQDHFVKEKNNLIMMLQREKENLCNLEKKYSS LSGGKGFPVNPNTLKEGYISVNEINEPCGNSTNLSPSTQFPADADAVATEPATAVLASQPQSKEHFRSLE ERKKQHKEGLYLSDTLPRKKTTSSISPHFSSATMGRSITPKAHLPLGQSNSCGSVLPPSLAAMAKDSESR RMLRGYNHQQMSEGHRQKSEFYNRTASESNVYLNSFHYPDHSYKDQAFDTLSLDSSDSMETSISACSPDN ISSASTSNIARIEEMERLLKQAHAEKTRLLESREREMEAKKRALEEEKRRREILEKRLQEETSQRQKLIE KEVKIRERQRAQARPLTRYLPVRKEDFDLRSHVETAGHNIDTCYHVSITEKTCRGFLIKMGGKIKTWKKR WFVFDRNKRTFSYYADKHETKLKGVIYFQAIEEVYYDHLKNANKSPNPLLTFSVKTHDRIYYMVAPSPEA MRIWMDVIVTGAEGYTHFLL
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