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Report for CCDS2975.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2975.1 Public Homo sapiens 3 NAA50 24 110 108 CCDS HistoryNCBI Gene:80218Re-query CCDS DB by CCDS ID:2975.1Re-query CCDS DB by GeneID:80218See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2975.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000240922.8 ENSP00000240922.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000240922.8Link to Ensembl Protein Viewer:ENSP00000240922.2Re-query CCDS DB by Nucleotide ID:ENST00000240922Re-query CCDS DB by Protein ID:ENSP00000240922
Original member Current member NCBI NM_025146.4 NP_079422.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025146.4Link to Protein Sequence:NP_079422.1Re-query CCDS DB by Nucleotide ID:NM_025146Re-query CCDS DB by Protein ID:NP_079422Link to BLAST:NP_079422.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079422.1 169 Q9GZZ1-1 169 100% 0 0

Chromosomal Locations for CCDS 2975.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 113721760 113721937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113722906 113722972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113723422 113723541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113723959 113724095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113745942 113745949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (510 nt):
ATGAAAGGTAGCCGGATCGAGCTGGGAGATGTGACACCACACAATATTAAACAGTTGAAAAGATTGAATC
AGGTCATCTTTCCAGTCAGCTACAATGACAAGTTCTACAAGGATGTGCTGGAGGTTGGCGAGCTAGCAAA
ACTTGCCTATTTCAATGATATTGCTGTAGGTGCAGTATGCTGTAGGGTGGATCATTCACAGAATCAGAAG
AGACTTTACATCATGACACTAGGATGTCTGGCACCTTACCGAAGGCTAGGAATAGGAACTAAAATGTTAA
ATCATGTCTTAAACATCTGTGAAAAAGATGGTACTTTTGACAACATTTATCTGCATGTCCAGATCAGCAA
TGAGTCGGCAATTGACTTCTACAGGAAGTTTGGCTTTGAGATTATTGAGACAAAGAAGAACTACTATAAG
AGGATAGAGCCCGCAGATGCTCATGTGCTGCAGAAAAACCTCAAAGTTCCTTCTGGTCAGAATGCAGATG
TGCAAAAGACAGACAACTGA

Translation (169 aa):
MKGSRIELGDVTPHNIKQLKRLNQVIFPVSYNDKFYKDVLEVGELAKLAYFNDIAVGAVCCRVDHSQNQK
RLYIMTLGCLAPYRRLGIGTKMLNHVLNICEKDGTFDNIYLHVQISNESAIDFYRKFGFEIIETKKNYYK
RIEPADAHVLQKNLKVPSGQNADVQKTDN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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