NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29909.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29909.1 Public Mus musculus 19 Zdhhc6 23 108 98 CCDS HistoryNCBI Gene:66980Re-query CCDS DB by CCDS ID:29909.1Re-query CCDS DB by GeneID:66980See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29909.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076891.6 ENSMUSP00000076157.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076891.6Link to Ensembl Protein Viewer:ENSMUSP00000076157.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000076891Re-query CCDS DB by Protein ID:ENSMUSP00000076157
Original member Current member EBI ENSMUST00000224897.1 ENSMUSP00000153014.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000224897.1Link to Ensembl Protein Viewer:ENSMUSP00000153014.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000224897Re-query CCDS DB by Protein ID:ENSMUSP00000153014
Original member Current member EBI ENSMUST00000226103.1 ENSMUSP00000153404.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226103.1Link to Ensembl Protein Viewer:ENSMUSP00000153404.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226103Re-query CCDS DB by Protein ID:ENSMUSP00000153404
Original member Current member NCBI NM_001033573.2 NP_001028745.1 Accepted alive Link to Nucleotide Sequence:NM_001033573.2Link to Protein Sequence:NP_001028745.1Re-query CCDS DB by Nucleotide ID:NM_001033573Re-query CCDS DB by Protein ID:NP_001028745Link to BLAST:NP_001028745.1
Original member Current member NCBI NM_025883.4 NP_080159.3 Accepted alive Link to Nucleotide Sequence:NM_025883.4Link to Protein Sequence:NP_080159.3Re-query CCDS DB by Nucleotide ID:NM_025883Re-query CCDS DB by Protein ID:NP_080159Link to BLAST:NP_080159.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028745.1 413 Q9CPV7-1 413 100% 0 0
NP_080159.3 413 Q9CPV7-1 413 100% 0 0

Chromosomal Locations for CCDS 29909.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 55298785 55298888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55302558 55302604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55302691 55302836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55303697 55303738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55304410 55304577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55308904 55308957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55309743 55309904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55311625 55311784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55313189 55313280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55314301 55314567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1242 nt):
ATGGGCATATTCTGCTCAGTAATCAAGTTTGAAAATCTTCAAGACTTAAGGAGACTGTGTCATTGGGGTC
CCATCATAGCCCTGGGTGTTATAGCAATATGTTCCACAATGGCCATGATCGACTCTGTCTTGTGGTATTG
GCCCTTACATACAACTGGAGGAAGTGTGAACTTCATCATGTTGATAAATTGGACCGTCATGATTCTTTAT
AATTACTTCAATGCCATGTTTGCTGGTCCTGGCTTCGTCCCTCGGGGGTGGAAACCGGAAAAGTCTCAGG
ATAGCATGTATCTCCAGTATTGTAAAGTCTGCCAAGCATACAAGGCGCCACGTTCACACCATTGCAGAAA
GTGTAACAGATGTGTAATGAAGATGGACCACCACTGCCCCTGGATCAACAACTGCTGTGGTCACCAGAAC
CACGCCTCGTTCACGCTCTTCCTCCTGTTGGCCCCTCTGGGCTGCACTCATGCTGCTTTCATCTTCGTGA
TGACAATGTACACACAGCTTTATAATCGGCTCTCCTTTGGGTGGAACACAGTCAAGATTGACATGAGTGC
AGCCAGGAGAGATCCACCTCCAATTGTTCCCTTCGGATTGGCTGCGTTTGCCGCCACCTTGTTTGCCTTG
GGATTGGCTTTGGGAACAACCATAGCTGTTGGGATGTTGTTTTTCATACAGATAAAAATTATTCTCAGAA
ACAAAACTTCTATTGAATCATGGATTGAAGAAAAGGCTAAAGATCGCATTCAGTATTACCAACTGGATGA
AGTCTTCATTTTTCCTTATGATATGGGAAGTAAGTGGAAGAACTTTAAACAGGTGTTTACATGGTCGGGA
GTTCCTGAAGGAGATGGACTTGAGTGGCCAATACGAGAGGGCTGTGACCAGTACAGCCTCACAATAGAAC
AGTTGAAGCAAAAGGCAGACAAGAGAGTCAGAAGTGTTCGCTATAAAGTCATAGAAGATTACAATGGTGC
CTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGG
CTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCGATACTGGTTGTATGGAGACAAAATTCTTG
ATGATTCCTTCATAGAAGGTACTTCAAGAGTAAGAGGGTGGTTTCCTAGAAACTGTGTGGAAAAGTGTCC
CTGTGATGGTGACTCAGATCCAGCCCCAGAGGGGGAGAAGAAGAACAGATAG

Translation (413 aa):
MGIFCSVIKFENLQDLRRLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIMLINWTVMILY
NYFNAMFAGPGFVPRGWKPEKSQDSMYLQYCKVCQAYKAPRSHHCRKCNRCVMKMDHHCPWINNCCGHQN
HASFTLFLLLAPLGCTHAAFIFVMTMYTQLYNRLSFGWNTVKIDMSAARRDPPPIVPFGLAAFAATLFAL
GLALGTTIAVGMLFFIQIKIILRNKTSIESWIEEKAKDRIQYYQLDEVFIFPYDMGSKWKNFKQVFTWSG
VPEGDGLEWPIREGCDQYSLTIEQLKQKADKRVRSVRYKVIEDYNGACCPLNRGVRTFFTSPCTEEPRIR
LQKGEFILATRGLRYWLYGDKILDDSFIEGTSRVRGWFPRNCVEKCPCDGDSDPAPEGEKKNR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH