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Report for CCDS30172.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30172.1 Public Mus musculus X Fmr1nb 23 108 98 CCDS HistoryNCBI Gene:207854Re-query CCDS DB by CCDS ID:30172.1Re-query CCDS DB by GeneID:207854See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30172.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071848.6 ENSMUSP00000071748.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071848.6Link to Ensembl Protein Viewer:ENSMUSP00000071748.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000071848Re-query CCDS DB by Protein ID:ENSMUSP00000071748
Original member NCBI NM_174993.2 NP_778158.2 Updated not alive Link to Nucleotide Sequence:NM_174993.2Link to Protein Sequence:NP_778158.2Re-query CCDS DB by Nucleotide ID:NM_174993Re-query CCDS DB by Protein ID:NP_778158
Current member NCBI NM_174993.3 NP_778158.2 Accepted alive Link to Nucleotide Sequence:NM_174993.3Link to Protein Sequence:NP_778158.2Re-query CCDS DB by Nucleotide ID:NM_174993Re-query CCDS DB by Protein ID:NP_778158Link to BLAST:NP_778158.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_778158.2 238 Q80ZA7-1 238 99.5798% 0 1

Chromosomal Locations for CCDS 30172.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 68761934 68762231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 68763932 68764009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 68768956 68769093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 68772045 68772141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 68803605 68803693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 68804426 68804442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (717 nt):
ATGCCTTCGGATCGAAGGCCAAGTCAGAGAAGGAATAGATCTAAGAGCCGTGATTATCGTGGTGCACGGT
CAAAGGTAACAAGAGCTGATACGAGGAACAGAGACGATACTCTTGCCCTCAGTATGTATCAGGGGCCTCC
GAGTGCCGACCAGGGGAACAACATGGCGGATGCCCCTCGGTTTGGCTTCTGGACTTCAGTAAGCCAGTGT
CTGCAATACTTGTGGGCCAGGAGGCACTTGGGCCTGCTTCTACTTTTATTCTGGACGCTGGTGATCCTGT
TCCGTCCTGTGAACACTGCGAAATTGCCCATTCTTGCTGAAGCTGCAGAACTTGAACCCCCTTTGGGAAA
TATGTTGGACTTTTTCTTTCCAACAACCTGCATCATAAGGGACAACCAGGTGGTGGTGGCATGTAATAAC
CAGCCGTATCTTAGCGAGAGTGAATGTTTAAAATCCAAGTGCTGTTCTTCAACATCTGGGACTATAATCA
AATGCTATGCCCCAGTAAGGGACAAGCCTACACAGGTGCTACGGGTGTTTGGCCTTGCTGCGATCAGCAT
TCTAGTCCTGGGATTTCTGCCTATGTGCTGCTGCTCCATGTGCTGGAGGAGGAAGAGGATGAACAGGATG
TTGAAGGTTTTGAAGAAACAGAAATCAAAAGGGAAGAAGCCTAAAGGAAGGAAGGCGTCAGAAGAGAGAG
CTTTACTGTCCCATTGA

Translation (238 aa):
MPSDRRPSQRRNRSKSRDYRGARSKVTRADTRNRDDTLALSMYQGPPSADQGNNMADAPRFGFWTSVSQC
LQYLWARRHLGLLLLLFWTLVILFRPVNTAKLPILAEAAELEPPLGNMLDFFFPTTCIIRDNQVVVACNN
QPYLSESECLKSKCCSSTSGTIIKCYAPVRDKPTQVLRVFGLAAISILVLGFLPMCCCSMCWRRKRMNRM
LKVLKKQKSKGKKPKGRKASEERALLSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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