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Report for CCDS3025.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3025.3 Public Homo sapiens 3 CCDC14 24 110 108 CCDS HistoryNCBI Gene:64770Re-query CCDS DB by CCDS ID:3025.3Re-query CCDS DB by GeneID:64770See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 3025.2
The coding region has been updated to shorten the N-terminus to one that is more supported by available conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 3025.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000310351.8 ENSP00000312031.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000310351.8Link to Ensembl Protein Viewer:ENSP00000312031.5Re-query CCDS DB by Nucleotide ID:ENST00000310351Re-query CCDS DB by Protein ID:ENSP00000312031
Original member Current member EBI ENST00000433542.7 ENSP00000395706.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000433542.7Link to Ensembl Protein Viewer:ENSP00000395706.3Re-query CCDS DB by Nucleotide ID:ENST00000433542Re-query CCDS DB by Protein ID:ENSP00000395706
Original member Current member NCBI NM_022757.5 NP_073594.5 Accepted alive Link to Nucleotide Sequence:NM_022757.5Link to Protein Sequence:NP_073594.5Re-query CCDS DB by Nucleotide ID:NM_022757Re-query CCDS DB by Protein ID:NP_073594Link to BLAST:NP_073594.5

Chromosomal Locations for CCDS 3025.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 123914779 123915718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123931102 123931234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123931308 123931526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123933673 123933755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123944849 123944990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123946803 123947319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123948691 123948785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123948896 123949132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123956046 123956115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123956355 123956427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123956740 123956795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123961144 123961173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2595 nt):
ATGGTCAGGTCTGGAGCTCGACCGGGCCAGGTGTTATCTTCAGGAAGGCACACTGGACCTGCTAAATTAA
CAAATGGAAAGAAAGCGACCTATTTAAGAAAAATACCACGTTTTAATGCAGATTCTGGCTATTCCATCCA
TTCTGATTCAGAAAGTCAGGCTGAAACTGTACACGGGCTTGATGGTTGTGCTTCTTTGCTGAGGGACATT
TTGAGAAATGAAGATTCAGCATCTTCAGATAATAAGAAACAGATACCTAATGAAGCTTCTGCTAGAAGTG
AAAGAGACACATCAGACCTAGAGCAAAACTGGTCATTGCAAGATCATTATAGAATGTATTCACCCATAAT
ATACCAAGCCCTCTGTGAGCACGTGCAGACTCAGATGTCACTGATGAATGACTTGACTTCAAAGAACATC
CCTAATGGAATTCCTGCTGTACCATGCCATGCTCCCTCTCATTCTGAATCTCAGGCAACTCCTCATTCTA
GTTATGGCTTATGTACCTCCACCCCAGTCTGGTCACTTCAGCGGCCACCCTGCCCTCCAAAGGTTCATTC
TGAAGTTCAAACTGATGGCAACAGTCAGTTTGCATCACAAGGTAAAACAGTTTCTGCAACCTGTACTGAT
GTTCTACGGAATTCATTTAATACCAGTCCTGGAGTTCCATGTAGCCTGCCCAAAACTGACATATCAGCTA
TTCCAACATTGCAGCAACTGGGCCTTGTTAATGGAATTCTGCCACAACAAGGAATTCATAAGGAAACAGA
CCTACTAAAATGTATTCAAACATATTTGTCTCTTTTTCGATCTCATGGAAAAGAAACGCATCTGGACAGT
CAGACACACCGAAGCCCTACTCAGTCACAACCAGCTTTCTTGGCCACTAATGAAGAAAAATGTGCCAGAG
AGCAAATTAGAGAGGCCACAAGTGAAAGAAAGGATTTAAACATACATGTGCGAGATACAAAAACAGTGAA
GGATGTACAGAAGGCAAAAAATGTGAACAAGACAGCTGAAAAAGTTAGAATTATAAAATATTTGTTGGGA
GAGCTCAAGGCCCTGGTAGCAGAACAAGAGGATTCAGAAATTCAGAGGTTGATTACAGAAATGGAGGCAT
GTATATCTGTACTTCCAACAGTAAGTGGAAACACAGATATTCAAGTTGAGATAGCACTGGCCATGCAACC
ATTAAGAAGTGAGAATGCTCAGTTACGAAGGCAGTTGAGAATTTTGAACCAGCAACTCAGAGAACAACAG
AAAACTCAAAAACCATCTGGTGCTGTGGATTGCAACCTTGAATTGTTTTCTCTTCAGTCATTGAATATGT
CACTGCAAAATCAATTGGAGGAGTCACTAAAGAGCCAGGAATTACTGCAGAGTAAAAATGAAGAGCTGTT
AAAAGTGATTGAAAATCAGAAAGATGAAAACAAAAAATTTAGTAGTATATTTAAAGACAAAGATCAAACT
ATACTTGAAAATAAACAGCAATATGATATTGAGATAACAAGAATAAAAATTGAATTGGAGGAAGCCCTAG
TCAATGTGAAAAGCTCCCAGTTTAAGTTAGAAACTGCTGAAAAGGAAAACCAGATATTGGGGATAACATT
ACGTCAGCGTGATGCTGAGGTGACTCGACTAAGAGAATTAACCAGAACTTTACAGACTAGCATGGCAAAG
CTTCTCTCCGATCTTAGTGTGGACAGTGCTCGCTGCAAGCCTGGGAATAACCTTACCAAATCACTCTTGA
ACATTCATGATAAACAACTTCAACATGACCCAGCTCCTGCTCACACTTCCATAATGAGCTATCTAAATAA
GTTAGAAACAAATTACAGTTTTACACATTCAGAGCCACTTTCTACAATTAAAAATGAGGAAACCATAGAG
CCAGACAAAACCTATGAAAATGTTCTGTCCTCCAGAGGCCCTCAAAATAGTAACACTAGGGGCATGGAGG
AAGCATCTGCACCTGGAATTATTTCTGCCCTTTCAAAACAGGATTCTGATGAAGGGAGTGAAACTATGGC
TTTAATAGAAGATGAGCATAATTTGGATAATACAATTTACATTCCTTTTGCTAGAAGCACTCCTGAAAAG
AAATCACCACTTTCTAAGAGACTATCCCCTCAGCCACAAATAAGAGCAGCTACAACACAGCTAGTCAGCA
ACAGCGGACTTGCTGTCTCTGGAAAAGAAAATAAACTGTGTACACCTGTAATCTGTTCCTCTTCAACAAA
GGAAGCAGAAGATGCACCTGAAAAACTTTCCAGAGCATCTGATATGAAGGACACACAGCTCCTCAAGAAA
ATAAAGGAAGCAATTGGTAAGATCCCTGCTGCCACCAAGGAGCCAGAGGAACAAACTGCATGTCATGGCC
CATCAGGTTGTCTTAGCAACAGCCTTCAAGTGAAAGGCAATACTGTCTGTGATGGTAGTGTTTTCACTTC
TGACTTGATGTCTGACTGGAGCATCTCTTCGTTTTCAACGTTCACTTCTCGTGATGAACAAGACTTCAGA
AATGGCCTTGCGGCATTAGATGCCAACATAGCTAGACTCCAGAAGTCTTTAAGGACTGGTCTTCTGGAGA
AATGA

Translation (864 aa):
MVRSGARPGQVLSSGRHTGPAKLTNGKKATYLRKIPRFNADSGYSIHSDSESQAETVHGLDGCASLLRDI
LRNEDSASSDNKKQIPNEASARSERDTSDLEQNWSLQDHYRMYSPIIYQALCEHVQTQMSLMNDLTSKNI
PNGIPAVPCHAPSHSESQATPHSSYGLCTSTPVWSLQRPPCPPKVHSEVQTDGNSQFASQGKTVSATCTD
VLRNSFNTSPGVPCSLPKTDISAIPTLQQLGLVNGILPQQGIHKETDLLKCIQTYLSLFRSHGKETHLDS
QTHRSPTQSQPAFLATNEEKCAREQIREATSERKDLNIHVRDTKTVKDVQKAKNVNKTAEKVRIIKYLLG
ELKALVAEQEDSEIQRLITEMEACISVLPTVSGNTDIQVEIALAMQPLRSENAQLRRQLRILNQQLREQQ
KTQKPSGAVDCNLELFSLQSLNMSLQNQLEESLKSQELLQSKNEELLKVIENQKDENKKFSSIFKDKDQT
ILENKQQYDIEITRIKIELEEALVNVKSSQFKLETAEKENQILGITLRQRDAEVTRLRELTRTLQTSMAK
LLSDLSVDSARCKPGNNLTKSLLNIHDKQLQHDPAPAHTSIMSYLNKLETNYSFTHSEPLSTIKNEETIE
PDKTYENVLSSRGPQNSNTRGMEEASAPGIISALSKQDSDEGSETMALIEDEHNLDNTIYIPFARSTPEK
KSPLSKRLSPQPQIRAATTQLVSNSGLAVSGKENKLCTPVICSSSTKEAEDAPEKLSRASDMKDTQLLKK
IKEAIGKIPAATKEPEEQTACHGPSGCLSNSLQVKGNTVCDGSVFTSDLMSDWSISSFSTFTSRDEQDFR
NGLAALDANIARLQKSLRTGLLEK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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