NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS30577.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30577.3 Public Homo sapiens 1 SLC45A1 24 110 108 CCDS HistoryNCBI Gene:50651Re-query CCDS DB by CCDS ID:30577.3Re-query CCDS DB by GeneID:50651See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 30577.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 30577.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000289877.8 ENSP00000289877.8 Accepted alive Link to Ensembl Transcript Viewer:ENST00000289877.8Link to Ensembl Protein Viewer:ENSP00000289877.8Re-query CCDS DB by Nucleotide ID:ENST00000289877Re-query CCDS DB by Protein ID:ENSP00000289877
Original member Current member EBI ENST00000471889.7 ENSP00000418096.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000471889.7Link to Ensembl Protein Viewer:ENSP00000418096.3Re-query CCDS DB by Nucleotide ID:ENST00000471889Re-query CCDS DB by Protein ID:ENSP00000418096
Original member Current member NCBI NM_001080397.3 NP_001073866.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080397.3Link to Protein Sequence:NP_001073866.3Re-query CCDS DB by Nucleotide ID:NM_001080397Re-query CCDS DB by Protein ID:NP_001073866Link to BLAST:NP_001073866.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073866.3 748 Q9Y2W3 748 100% 0 0

Chromosomal Locations for CCDS 30577.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 8324330 8324726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8325298 8325390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8325818 8326042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8330209 8330936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8335437 8335590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8337816 8337992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8339493 8339698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8343747 8344013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2247 nt):
ATGATCCCCGCAGCCAGCAGCACCCCGCCGGGAGATGCCCTCTTCCCCAGCGTGGCCCCACAGGACTTCT
GGAGGTCCCAGGTCACGGGCTACTCGGGGTCCGTGACACGACACCTCAGTCACCGGGCCAACAACTTCAA
ACGACACCCCAAGAGGAGGAAGTGCATTCGTCCCTCCCCACCCCCGCCCCCCAACACCCCGTGCCCGCTT
GAGCTGGTGGACTTCGGGGACCTGCACCCCCAGAGGTCCTTCCGGGAGCTGCTTTTCAACGGCTGCATTC
TCTTTGGCATCGAGTTCAGCTACGCCATGGAGACGGCGTACGTGACCCCGGTGCTCCTGCAGATGGGCCT
GCCCGACCAGCTCTACAGCCTGGTGTGGTTCATCAGCCCCATCCTCGGATTCCTACTGCAGCCTCTGTTG
GGTGCTTGGAGTGACCGGTGTACCTCAAGGTTTGGAAGGAGACGCCCTTTCATTCTTGTCCTGGCTATAG
GGGCACTGCTGGGCCTCTCGCTCTTGCTGAATGGCCGGGACATTGGCATCGCCCTGGCTGACGTGACCGG
GAACCACAAGTGGGGCCTGCTGCTGACCGTGTGCGGTGTGGTGCTGATGGACTTTAGCGCCGACTCGGCG
GACAACCCCAGCCACGCCTACATGATGGACGTGTGCAGCCCCGCAGACCAGGACCGAGGCCTGAACATCC
ACGCCCTCCTGGCAGGTCTCGGAGGAGGCTTTGGATACGTGGTCGGCGGAATCCACTGGGATAAAACGGG
CTTCGGGAGGGCCCTGGGGGGACAGCTCCGAGTCATTTACCTCTTCACTGCGGTCACCCTGAGCGTCACC
ACCGTCCTGACCCTGGTCAGCATCCCTGAGAGGCCGCTGCGGCCGCCGAGTGAGAAGCGGGCAGCCATGA
AGAGCCCCAGCCTCCCGCTGCCCCCGTCCCCACCCGTCCTGCCAGAGGAAGGCCCTGGCGACAGCCTCCC
GTCGCACACGGCCACCAACTTCTCCAGCCCCATCTCGCCGCCCAGCCCCCTCACGCCCAAGTACGGCAGC
TTCATCAGCAGGGACAGCTCCCTGACGGGCATCAGCGAGTTCGCCTCATCCTTTGGCACGGCCAACATAG
ACAGCGTCCTCATTGACTGCTTCACGGGCGGCCACGACAGCTACCTGGCCATCCCTGGCAGCGTCCCCAG
GCCGCCCATCAGCGTCAGCTTCCCCCGGGCCCCCGACGGCTTCTACCGCCAGGACCGTGGACTTCTGGAG
GGCAGAGAGGGTGCCCTGACCTCCGGCTGTGACGGGGACATTCTGAGGGTGGGCTCCTTGGACACCTCTA
AGCCGAGGTCATCAGGGATTCTGAAGAGACCTCAGACCTTGGCCATCCCGGACGCAGCCGGAGGAGGGGG
TCCCGAAACCAGCAGGAGAAGGAATGTGACCTTCAGTCAGCAGGTGGCCAATATCCTGCTCAACGGCGTG
AAGTATGAGAGCGAGCTGACGGGCTCCAGCGAGCGCGCGGAGCAGCCTCTGTCCGTGGGGCGCCTCTGCT
CCACCATCTGCAACATGCCCAAGGCGCTACGCACCCTCTGCGTCAACCACTTCCTGGGGTGGCTCTCATT
CGAGGGGATGTTGCTCTTCTACACAGACTTCATGGGCGAGGTGGTGTTTCAGGGGGACCCCAAGGCCCCG
CACACATCAGAGGCGTATCAGAAGTACAACAGCGGCGTGACCATGGGCTGCTGGGGCATGTGTATCTACG
CCTTCAGTGCTGCCTTCTACTCAGCTATCCTGGAGAAGCTGGAGGAGTTCCTCAGCGTCCGCACCCTCTA
CTTCATCGCCTATCTCGCCTTCGGCCTGGGGACCGGGCTTGCCACCCTCTCCAGGAACCTCTACGTGGTC
CTGTCGCTCTGCATAACCTACGGGATTTTATTTTCCACCCTGTGCACCTTGCCTTACTCGCTGCTCTGCG
ATTACTATCAGAGTAAGAAGTTTGCAGGGTCCAGTGCGGACGGCACCCGGCGGGGCATGGGCGTGGACAT
CTCTCTGCTGAGCTGCCAGTACTTCCTGGCTCAGATTCTGGTCTCCCTGGTCCTGGGGCCCCTGACCTCG
GCCGTGGGCAGTGCCAACGGGGTGATGTACTTCTCCAGCCTCGTGTCCTTCCTGGGCTGCCTGTACTCCT
CCCTGTTTGTCATTTATGAAATTCCTCCCAGCGACGCTGCAGACGAGGAGCACCGGCCCCTCCTGCTGAA
CGTCTGA

Translation (748 aa):
MIPAASSTPPGDALFPSVAPQDFWRSQVTGYSGSVTRHLSHRANNFKRHPKRRKCIRPSPPPPPNTPCPL
ELVDFGDLHPQRSFRELLFNGCILFGIEFSYAMETAYVTPVLLQMGLPDQLYSLVWFISPILGFLLQPLL
GAWSDRCTSRFGRRRPFILVLAIGALLGLSLLLNGRDIGIALADVTGNHKWGLLLTVCGVVLMDFSADSA
DNPSHAYMMDVCSPADQDRGLNIHALLAGLGGGFGYVVGGIHWDKTGFGRALGGQLRVIYLFTAVTLSVT
TVLTLVSIPERPLRPPSEKRAAMKSPSLPLPPSPPVLPEEGPGDSLPSHTATNFSSPISPPSPLTPKYGS
FISRDSSLTGISEFASSFGTANIDSVLIDCFTGGHDSYLAIPGSVPRPPISVSFPRAPDGFYRQDRGLLE
GREGALTSGCDGDILRVGSLDTSKPRSSGILKRPQTLAIPDAAGGGGPETSRRRNVTFSQQVANILLNGV
KYESELTGSSERAEQPLSVGRLCSTICNMPKALRTLCVNHFLGWLSFEGMLLFYTDFMGEVVFQGDPKAP
HTSEAYQKYNSGVTMGCWGMCIYAFSAAFYSAILEKLEEFLSVRTLYFIAYLAFGLGTGLATLSRNLYVV
LSLCITYGILFSTLCTLPYSLLCDYYQSKKFAGSSADGTRRGMGVDISLLSCQYFLAQILVSLVLGPLTS
AVGSANGVMYFSSLVSFLGCLYSSLFVIYEIPPSDAADEEHRPLLLNV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH