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Report for CCDS30594.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30594.1 Public Homo sapiens 1 PRAMEF6 24 110 108 CCDS HistoryNCBI Gene:440561Re-query CCDS DB by CCDS ID:30594.1Re-query CCDS DB by GeneID:440561See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30594.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376189.5 ENSP00000365360.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000376189.5Link to Ensembl Protein Viewer:ENSP00000365360.1Re-query CCDS DB by Nucleotide ID:ENST00000376189Re-query CCDS DB by Protein ID:ENSP00000365360
Original member Current member EBI ENST00000415464.6 ENSP00000401281.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000415464.6Link to Ensembl Protein Viewer:ENSP00000401281.2Re-query CCDS DB by Nucleotide ID:ENST00000415464Re-query CCDS DB by Protein ID:ENSP00000401281
Original member Current member NCBI NM_001010889.2 NP_001010889.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001010889.2Link to Protein Sequence:NP_001010889.1Re-query CCDS DB by Nucleotide ID:NM_001010889Re-query CCDS DB by Protein ID:NP_001010889Link to BLAST:NP_001010889.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001010889.1 476 Q5VXH4 476 100% 0 0

Chromosomal Locations for CCDS 30594.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 12938675 12939236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 12940984 12941565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 12942232 12942518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1431 nt):
ATGAGCATCCGGACTCCACCCAGACTCCTGGAGCTTGCAGGGCGGAGCCTGCTGAGGGACCAAGCCTTGG
CCATGTCCACCCTGGAGGAGCTGCCCACAGAACTTTTCCCCCCACTGTTCATGGAGGCCTTCAGCAGGAG
ACGCTGTGAGGCCCTGAAGCTGATGGTGCAGGCCTGGCCCTTCCGCCGCCTCCCTCTGAGGCCTCTGATA
AAGATGCCTTGTCTGGAGGCCTTCCAAGCTGTGCTCGATGGGCTGGATGCACTGCTTACCCAAGGGGTTC
ATCCCAGGAGGTGGAAACTTCAAGTGCTGGATTTACAGGATGTCTGTGAGAACTTCTGGATGGTTTGGTC
TGAAGCTATGGCCCGTGGGTGCTTCCTCAATGCCAAGAGGAACAAAACACCAGTGCAGGACTGTCCAAGG
ATGAGAGGACAGCAGCCCTTGACTGTGTTCGTAGAACTTTGGCTCAAGAACAGGACTCTGGATGAATACC
TCACCTGCCTCCTTCTATGGGTCAAGCAGAGGAAAGATTTACTACACCTGTGCTGTAAGAAGCTGAAAAT
TTTGGGAATGCCCTTCCGCAATATCAGAAGCATCCTGAAAATGGTGAACCTAGACTGTATCCAGGAGGTG
GAAGTGAATTGCAAGTGGGTACTGCCCATCCTGACACAGTTTACCCCATACCTGGGCCACATGAGGAATC
TTCAGAAGCTCGTTCTCTCCCACATGGATGTCTCTCGCTACGTTTCCCCAGAGCAGAAGAAGGAGATTGT
TACCCAGTTCACCACTCAGTTCCTCAAGCTGTGCTGCCTCCAAAAGCTTTCTATGAACTCTGTTTCTTTC
CTCGAAGGCCACCTGGACCAGCTGCTCAGCTGTCTGAAGACCTCGTTAAAGGTCCTCACAATAACTAACT
GTGTGCTTTTGGAATCAGACTTGAAGCATCTATCCCAGTGCCCGAGTATCAGTCAACTAAAGACCCTGGA
CCTGAGTGGCATCAGACTGACCAATTACAGTCTTGTGCCTCTCCAAATTCTCCTAGAAAAAGTTGCAGCC
ACCCTTGAGTACCTGGATTTAGATGACTGTGGCATCATAGACTCCCAAGTCAACGCCATCCTGCCTGCCC
TGAGCCGCTGCTTTGAGCTCAACACCTTCAGCTTCTGTGGAAATCCCATCTCCATGGCCACCCTGGAGAA
CCTGCTGAGCCACACAATCATACTCAAAAACTTATGCGTGGAGCTGTATCCTGCCCCCCGGGAGAGTTAT
GATGCTGATGGTACTCTCTGCTGGAGCAGATTTGCTCAAATTAGGGCTGAGCTGATGAAGAGAGTGAGGG
ACTTAAGGCACCCCAAGAGGATCTTGTTCTGTACTGACTGCTGCCCTGACTGTGGCAACAGGTCATTTTA
TGACCTGGAGGCAGATCAATGCTGCTGTTGA

Translation (476 aa):
MSIRTPPRLLELAGRSLLRDQALAMSTLEELPTELFPPLFMEAFSRRRCEALKLMVQAWPFRRLPLRPLI
KMPCLEAFQAVLDGLDALLTQGVHPRRWKLQVLDLQDVCENFWMVWSEAMARGCFLNAKRNKTPVQDCPR
MRGQQPLTVFVELWLKNRTLDEYLTCLLLWVKQRKDLLHLCCKKLKILGMPFRNIRSILKMVNLDCIQEV
EVNCKWVLPILTQFTPYLGHMRNLQKLVLSHMDVSRYVSPEQKKEIVTQFTTQFLKLCCLQKLSMNSVSF
LEGHLDQLLSCLKTSLKVLTITNCVLLESDLKHLSQCPSISQLKTLDLSGIRLTNYSLVPLQILLEKVAA
TLEYLDLDDCGIIDSQVNAILPALSRCFELNTFSFCGNPISMATLENLLSHTIILKNLCVELYPAPRESY
DADGTLCWSRFAQIRAELMKRVRDLRHPKRILFCTDCCPDCGNRSFYDLEADQCCC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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