NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS30689.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30689.1 Public Homo sapiens 1 FOXJ3 24 110 108 CCDS HistoryNCBI Gene:22887Re-query CCDS DB by CCDS ID:30689.1Re-query CCDS DB by GeneID:22887See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30689.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361346.6 ENSP00000354620.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361346.6Link to Ensembl Protein Viewer:ENSP00000354620.1Re-query CCDS DB by Nucleotide ID:ENST00000361346Re-query CCDS DB by Protein ID:ENSP00000354620
Original member Current member EBI ENST00000372572.5 ENSP00000361653.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372572.5Link to Ensembl Protein Viewer:ENSP00000361653.1Re-query CCDS DB by Nucleotide ID:ENST00000372572Re-query CCDS DB by Protein ID:ENSP00000361653
Original member Current member EBI ENST00000372573.5 ENSP00000361654.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372573.5Link to Ensembl Protein Viewer:ENSP00000361654.1Re-query CCDS DB by Nucleotide ID:ENST00000372573Re-query CCDS DB by Protein ID:ENSP00000361654
Original member Current member EBI ENST00000545068.5 ENSP00000439044.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000545068.5Link to Ensembl Protein Viewer:ENSP00000439044.1Re-query CCDS DB by Nucleotide ID:ENST00000545068Re-query CCDS DB by Protein ID:ENSP00000439044
Original member Current member NCBI NM_001198850.2 NP_001185779.1 Accepted alive Link to Nucleotide Sequence:NM_001198850.2Link to Protein Sequence:NP_001185779.1Re-query CCDS DB by Nucleotide ID:NM_001198850Re-query CCDS DB by Protein ID:NP_001185779Link to BLAST:NP_001185779.1
Original member Current member NCBI NM_001198851.2 NP_001185780.1 Accepted alive Link to Nucleotide Sequence:NM_001198851.2Link to Protein Sequence:NP_001185780.1Re-query CCDS DB by Nucleotide ID:NM_001198851Re-query CCDS DB by Protein ID:NP_001185780Link to BLAST:NP_001185780.1
Original member Current member NCBI NM_014947.5 NP_055762.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014947.5Link to Protein Sequence:NP_055762.3Re-query CCDS DB by Nucleotide ID:NM_014947Re-query CCDS DB by Protein ID:NP_055762Link to BLAST:NP_055762.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185779.1 622 Q9UPW0-1 622 100% 0 0
NP_001185780.1 622 Q9UPW0-1 622 100% 0 0
NP_055762.3 622 Q9UPW0-1 622 100% 0 0

Chromosomal Locations for CCDS 30689.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 42179710 42179825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42181917 42182024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42188737 42188928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42189303 42189404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42191303 42191719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42194890 42195064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42199102 42199230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42205762 42205863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42227883 42227966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42265115 42265189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42278348 42278672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42311050 42311093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1869 nt):
ATGGGTTTGTATGGACAGGCTTGTCCATCTGTAACTTCATTAAGGATGACATCTGAACTGGAGAGCAGCC
TAACGTCTATGGACTGGTTACCACAGCTCACCATGAGAGCAGCCATCCAAAAATCTGATGCTACACAAAA
TGCACATGGAACAGGAATTTCTAAGAAGAATGCACTCCTTGACCCAAATACAACTCTGGACCAGGAAGAA
GTCCAACAGCACAAAGATGGGAAACCTCCATACAGTTATGCCAGCCTCATTACATTTGCAATTAATAGCT
CACCCAAAAAGAAAATGACTTTAAGTGAAATTTATCAGTGGATTTGTGATAACTTCCCATATTATAGAGA
GGCTGGCAGTGGTTGGAAGAATTCCATACGACATAATCTGTCATTGAACAAATGTTTCCTTAAAGTGCCT
CGATCTAAGGATGACCCTGGAAAGGGGTCCTACTGGGCAATAGACACCAATCCGAAGGAAGATGTGCTGC
CTACTCGGCCAAAGAAGAGGGCACGATCTGTAGAACGGGCCTCAACTCCATATAGCATAGATTCAGATTC
TTTGGGAATGGAGTGTATTATTTCGGGAAGTGCCTCTCCAACTCTGGCAATCAACACTGTGACTAACAAA
GTAACATTGTATAACACTGATCAGGATGGTAGTGATAGCCCACGCAGTAGCCTTAACAACAGTCTCTCAG
ACCAGAGTTTGGCATCTGTTAATTTGAACAGTGTTGGAAGTGTGCATAGTTATACACCGGTGACAAGCCA
TCCAGAATCAGTCTCTCAATCATTAACTCCTCAGCAGCAACCACAGTACAACCTTCCAGAAAGAGACAAG
CAACTACTTTTCTCAGAATATAATTTTGAAGATCTTAGTGCCTCATTTCGGAGCCTTTATAAGTCAGTTT
TTGAGCAGTCACTTAGTCAACAAGGTTTGATGAACATCCCTTCTGAATCTTCCCAGCAGTCCCACACTTC
ATGTACCTATCAGCACTCTCCCAGCAGTACAGTGAGCACTCACCCACACAGCAACCAAAGCAGCCTGTCC
AACAGTCATGGCAGTGGCCTCAACACCACAGGCAGTAATTCGGTTGCACAGGTCTCACTGTCTCACCCCC
AGATGCACACACAGCCATCTCCACATCCTCCCCATCGACCGCATGGTTTACCGCAGCATCCGCAGCGTTC
CCCACACCCAGCACCACACCCACAGCAACACAGCCAGCTCCAGTCCCCTCACCCCCAGCATCCCTCTCCA
CATCAACACATACAGCACCATCCGAACCATCAGCATCAGACGTTAACACATCAGGCACCCCCACCCCCAC
AACAGGTATCCTGTAATTCTGGTGTTTCAAATGATTGGTATGCGACACTTGATATGCTAAAAGAAAGCTG
TCGAATTGCCAGCAGTGTTAATTGGTCAGATGTAGACCTTTCACAGTTTCAAGGTCTGATGGAGAGTATG
AGACAGGCAGATCTCAAGAACTGGTCTTTAGACCAGGTTCAGTTTGCCGATCTTTGTTCTTCTCTTAATC
AGTTCTTTACACAAACTGGCCTTATACATTCACAGAGTAATGTTCAACAAAATGTTTGTCATGGTGCCAT
GCATCCAACAAAACCTTCCCAACACATTGGAACAGGAAATTTGTACATAGATTCTAGGCAAAATCTCCCT
CCTTCAGTGATGCCACCCCCTGGTTATCCTCATATCCCACAGGCACTCAGCACTCCAGGAACAACGATGG
CAGGCCATCACAGAGCCATGAACCAGCAGCACATGATGCCTTCCCAAGCCTTCCAGATGCGGCGTTCCCT
GCCTCCAGATGACATCCAGGATGACTTTGATTGGGATTCAATTGTGTAG

Translation (622 aa):
MGLYGQACPSVTSLRMTSELESSLTSMDWLPQLTMRAAIQKSDATQNAHGTGISKKNALLDPNTTLDQEE
VQQHKDGKPPYSYASLITFAINSSPKKKMTLSEIYQWICDNFPYYREAGSGWKNSIRHNLSLNKCFLKVP
RSKDDPGKGSYWAIDTNPKEDVLPTRPKKRARSVERASTPYSIDSDSLGMECIISGSASPTLAINTVTNK
VTLYNTDQDGSDSPRSSLNNSLSDQSLASVNLNSVGSVHSYTPVTSHPESVSQSLTPQQQPQYNLPERDK
QLLFSEYNFEDLSASFRSLYKSVFEQSLSQQGLMNIPSESSQQSHTSCTYQHSPSSTVSTHPHSNQSSLS
NSHGSGLNTTGSNSVAQVSLSHPQMHTQPSPHPPHRPHGLPQHPQRSPHPAPHPQQHSQLQSPHPQHPSP
HQHIQHHPNHQHQTLTHQAPPPPQQVSCNSGVSNDWYATLDMLKESCRIASSVNWSDVDLSQFQGLMESM
RQADLKNWSLDQVQFADLCSSLNQFFTQTGLIHSQSNVQQNVCHGAMHPTKPSQHIGTGNLYIDSRQNLP
PSVMPPPGYPHIPQALSTPGTTMAGHHRAMNQQHMMPSQAFQMRRSLPPDDIQDDFDWDSIV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH