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Report for CCDS30795.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30795.1 Public Homo sapiens 1 AMIGO1 24 110 108 CCDS HistoryNCBI Gene:57463Re-query CCDS DB by CCDS ID:30795.1Re-query CCDS DB by GeneID:57463See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30795.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369862.1 ENSP00000358878.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000369862.1Link to Ensembl Protein Viewer:ENSP00000358878.1Re-query CCDS DB by Nucleotide ID:ENST00000369862Re-query CCDS DB by Protein ID:ENSP00000358878
Original member Current member EBI ENST00000369864.5 ENSP00000358880.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369864.5Link to Ensembl Protein Viewer:ENSP00000358880.4Re-query CCDS DB by Nucleotide ID:ENST00000369864Re-query CCDS DB by Protein ID:ENSP00000358880
Original member Current member NCBI NM_020703.4 NP_065754.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020703.4Link to Protein Sequence:NP_065754.2Re-query CCDS DB by Nucleotide ID:NM_020703Re-query CCDS DB by Protein ID:NP_065754Link to BLAST:NP_065754.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065754.2 493 Q86WK6 493 100% 0 0

Chromosomal Locations for CCDS 30795.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 109507431 109508912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1482 nt):
ATGCACCCCCACCGTGACCCGAGAGGCCTCTGGCTCCTGCTGCCGTCCTTGTCCCTGCTGCTTTTTGAGG
TGGCCAGAGCTGGCCGAGCCGTGGTTAGCTGTCCTGCCGCCTGCTTGTGCGCCAGCAACATCCTCAGCTG
CTCCAAGCAGCAGCTGCCCAATGTGCCCCATTCCTTGCCCAGTTACACAGCACTACTGGACCTCAGTCAC
AACAACCTGAGCCGCCTGCGGGCCGAGTGGACCCCCACGCGCCTGACCCAACTGCACTCCCTGCTGCTGA
GCCACAACCACCTGAACTTCATCTCCTCTGAGGCCTTTTCCCCGGTACCCAACCTGCGCTACCTGGACCT
CTCCTCCAACCAGCTGCGTACACTGGATGAGTTCCTGTTCAGTGACCTGCAAGTACTGGAGGTGCTGCTG
CTCTACAATAACCACATCATGGCGGTGGACCGGTGCGCCTTCGATGACATGGCCCAGCTGCAGAAACTCT
ACTTGAGCCAGAACCAGATCTCTCGCTTCCCTCTGGAACTGGTCAAGGAAGGAGCCAAGCTACCCAAACT
AACGCTCCTGGATCTCTCTTCTAACAAGCTGAAGAACTTGCCATTGCCTGACCTGCAGAAGCTGCCGGCC
TGGATCAAGAATGGGCTGTACCTACATAACAACCCCCTGAACTGCGACTGTGAGCTCTACCAGCTGTTTT
CACACTGGCAGTATCGGCAGCTGAGCTCCGTGATGGACTTTCAAGAGGATCTGTACTGCATGAACTCCAA
GAAGCTGCACAATGTCTTCAACCTGAGTTTCCTCAACTGTGGCGAGTACAAGGAGCGTGCCTGGGAGGCC
CACCTGGGTGACACCTTGATCATCAAGTGTGACACCAAGCAGCAAGGGATGACCAAGGTGTGGGTGACAC
CAAGTAATGAACGGGTGCTAGATGAGGTGACCAATGGCACAGTGAGTGTGTCTAAGGATGGCAGTCTTCT
TTTCCAGCAGGTGCAGGTCGAGGACGGTGGTGTGTATACCTGCTATGCCATGGGAGAGACTTTCAATGAG
ACACTGTCTGTGGAATTGAAAGTGCACAATTTCACCTTGCACGGACACCATGACACCCTCAACACAGCCT
ATACCACCCTAGTGGGCTGTATCCTTAGTGTGGTCCTGGTCCTCATATACCTATACCTCACCCCTTGCCG
CTGCTGGTGCCGGGGTGTAGAGAAGCCTTCCAGCCATCAAGGAGACAGCCTCAGCTCTTCCATGCTTAGT
ACCACACCCAACCATGATCCTATGGCTGGTGGGGACAAAGATGATGGTTTTGACCGGCGGGTGGCTTTCC
TGGAACCTGCTGGACCTGGGCAGGGTCAAAACGGCAAGCTCAAGCCAGGCAACACCCTGCCAGTGCCTGA
GGCCACAGGCAAGGGCCAACGGAGGATGTCGGATCCAGAATCAGTCAGCTCGGTCTTCTCTGATACGCCC
ATTGTGGTGTGA

Translation (493 aa):
MHPHRDPRGLWLLLPSLSLLLFEVARAGRAVVSCPAACLCASNILSCSKQQLPNVPHSLPSYTALLDLSH
NNLSRLRAEWTPTRLTQLHSLLLSHNHLNFISSEAFSPVPNLRYLDLSSNQLRTLDEFLFSDLQVLEVLL
LYNNHIMAVDRCAFDDMAQLQKLYLSQNQISRFPLELVKEGAKLPKLTLLDLSSNKLKNLPLPDLQKLPA
WIKNGLYLHNNPLNCDCELYQLFSHWQYRQLSSVMDFQEDLYCMNSKKLHNVFNLSFLNCGEYKERAWEA
HLGDTLIIKCDTKQQGMTKVWVTPSNERVLDEVTNGTVSVSKDGSLLFQQVQVEDGGVYTCYAMGETFNE
TLSVELKVHNFTLHGHHDTLNTAYTTLVGCILSVVLVLIYLYLTPCRCWCRGVEKPSSHQGDSLSSSMLS
TTPNHDPMAGGDKDDGFDRRVAFLEPAGPGQGQNGKLKPGNTLPVPEATGKGQRRMSDPESVSSVFSDTP
IVV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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