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Report for CCDS30808.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
30808.1 |
Public |
Homo sapiens |
1 |
LRIG2 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:9860](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:30808.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:9860](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 1 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 30808.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000361127.6 |
ENSP00000355396.4 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000361127.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000355396.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000361127](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000355396](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_014813.3 |
NP_055628.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_014813.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_055628.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_014813](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_055628](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_055628.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_055628.1 |
1065 |
O94898 |
1065 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 30808.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3198 nt): ATGGCGCCGGCGCCCCTAGGCGTCCCGGAGGAGCAGTTGCTGGGGTGTCGATCTAGAGTGCTTTCTCGGT TACTCTTCATTGCCCAGACCGCTCTCCTCCTGTTGCCCGCCGCCGGAGCAGGTCTCTGCCCCGCGCCCTG CTCCTGCCGCATTCCTCTCCTGGACTGCAGTCGCAGGAAATTGCCCGCACCGAGCTGGAGGGCGCTGTCG GGCTTGCTGCCCCCCGACACCGCTATCCTGGATTTCAGTCATAATCGGTTGTCTAACTGGAACATCAGCT TGGAATCACAAACATTACAGGAAGTGAAAATGAATTACAATGAACTAACAGAAATCCCGTATTTTGGAGA ACCTACATCTAATATTACTCTACTTTCATTAGTCCATAATATAATCCCAGAAATAAATGCACAGGCACTC CAGTTTTACCCTGCTCTGGAGAGTTTAGACCTCAGCTCAAATATAATATCAGAAATCAAGACATCTTCAT TTCCTCGCATGCAGCTTAAATACCTGAATTTAAGTAATAACAGAATAACCACCTTGGAGGCTGGTTGCTT CGATAATTTATCAAGTTCCTTATTAGTGGTAAAGTTAAACCGTAACCGAATGAGCATGATTCCACCTAAG ATCTTCAAGCTGCCTCACCTCCAATTCTTGGAACTTAAAAGAAACAGAATTAAAATTGTGGAAGGTCTTA CATTCCAAGGGCTTGACTCCTTAAGATCTTTGAAAATGCAGCGGAATGGAATTAGCAAACTTAAGGATGG AGCATTTTTTGGCTTGAATAACATGGAAGAACTAGAACTGGAACACAACAACCTTACACGAGTAAACAAG GGGTGGTTGTATGGCTTGCGAATGTTACAGCAGCTCTATGTGAGCCAGAATGCTATTGAAAGAATCAGCC CTGATGCATGGGAGTTCTGCCAAAGACTATCCGAACTTGATTTGTCCTATAACCAGCTGACCCGCCTGGA TGAATCTGCCTTTGTGGGTCTGAGCTTATTGGAGAGATTGAATTTAGGAGACAACAGAGTCACTCATATT GCTGATGGTGTATTTAGATTTCTTTCCAATCTTCAGACATTAGACTTAAGAAACAATGAAATTTCATGGG CCATAGAAGATGCTAGTGAAGCCTTTGCTGGACTCACAAGTCTCACTAAACTAATCTTACAAGGAAACCA GATTAAGTCAATTACAAAGAAAGCATTCATTGGTCTTGAATCCCTTGAGCATCTAGATTTGAACAATAAT GCTATAATGTCTATCCAAGAAAATGCTTTTTCTCAGACTCATTTAAAAGAACTGATTCTGAACACAAGCA GTTTGCTCTGTGACTGCCATTTGAAGTGGCTACTTCAATGGTTGGTTGATAATAACTTTCAACATTCTGT GAATGTAAGCTGTGCACACCCTGAATGGCTAGCAGGGCAAAGCATCCTGAATGTGGATCTGAAAGATTTT GTCTGTGATGATTTTCTCAAGCCACAGATAAGGACACATCCTGAAACCATAATTGCTCTAAGAGGCATGA ATGTGACTCTGACGTGCACTGCAGTGAGCAGCAGTGATTCACCCATGTCCACTGTGTGGCGCAAAGACAG TGAAATCCTGTATGACGTGGATACTGAGAATTTTGTTCGTTATTGGCAGCAAGCTGGAGAAGCTCTGGAA TATACTAGTATCTTACATCTTTTCAATGTGAATTTCACAGATGAAGGAAAATATCAGTGTATTGTTACTA ATCACTTTGGTTCTAATTATTCTCAGAAAGCCAAACTGACTGTAAATGAGATGCCATCTTTTCTGAAAAC GCCAATGGATCTGACTATTCGCACTGGTGCCATGGCCAGATTAGAATGTGCTGCAGAGGGACACCCTGCA CCTCAGATTTCCTGGCAGAAAGATGGTGGTACTGACTTTCCTGCGGCTCGAGAAAGACGCATGCACGTCA TGCCCGAGGATGACGTCTTCTTTATTGCCAATGTGAAAATAGAAGATATGGGAATCTATAGCTGCATGGC ACAAAATACAGCAGGAGGTCTCTCAGCAAATGCTTCCCTAACAGTGTTAGAGACACCCTCATTTATTAGA CCCCTGGAGGATAAGACAGTAACACGAGGTGAAACTGCGGTGTTACAGTGCATAGCTGGAGGGAGTCCTG CCCCTCGTCTCAACTGGACTAAAGATGATGGGCCTTTGCTGGTGACAGAACGACATTTCTTTGCTGCAGC CAATCAGCTTCTCATCATTGTAGATGCCGGGCTAGAAGATGCTGGGAAATATACCTGCATTATGTCTAAC ACCCTTGGGACAGAACGTGGCCACATTTACCTAAATGTCATTTCATCCCCCAATTGTGACTCTTCCCAGA GTAGCATTGGGCATGAAGATGATGGCTGGACCACAGTTGGCATTGTCATCATTGTTGTGGTCTGCTGTGT TGTTGGCACTTCTTTGATCTGGGTCATTGTTATTTACCACATGAGAAGGAAAAATGAAGACTATAGTATC ACAAACACAGAGGAGCTCAATCTGCCTGCAGACATTCCCAGCTACTTGTCTTCCCAAGGAACGCTGTCTG AGCCACAGGAAGGCTACAGCAACTCTGAGGCAGGCAGTCATCAGCAACTTATGCCTCCTGCCAATGGATA TATACACAAAGGCACTGACGGTGGCACTGGTACCCGGGTGATTTGCTCAGATTGTTATGACAATGCCAAC ATCTACTCCAGGACCCGAGAATACTGTCCATACACCTATATTGCTGAGGAGGACGTTCTTGATCAGACAC TGTCCAGCCTCATGGTCCAAATGCCTAAAGAGACATATTTAGTACATCCTCCCCAGGATACTACTGCCCT AGAGAGCCTGATACCGTCAGCCAACAGAGAGCCATCTGCCTTTCCCACCAACCATGAGAGGATAAGTGAG AAGAAACTTCCCTCCACACAGATGAGCGGTGAAACATTGCAGCGGCCCGTGTGGAACATAAACAGAGAAC TAGGCCTGCCTCATCCTCCTTTTTCCCAGCAGCCAGTCCATGAGTCACCACAACTTCATCAAAATGAGGG CCTGGCAGGGAGAGAGCCAGACTGTTCTGCTTCTTCCATGTCCTGCCACAGGTTACAGGATCATGCTTTT GATTTTAGTAGGACTCGGAACATTCAAGATGGTAGTGAGGGCACATGA
Translation (1065 aa): MAPAPLGVPEEQLLGCRSRVLSRLLFIAQTALLLLPAAGAGLCPAPCSCRIPLLDCSRRKLPAPSWRALS GLLPPDTAILDFSHNRLSNWNISLESQTLQEVKMNYNELTEIPYFGEPTSNITLLSLVHNIIPEINAQAL QFYPALESLDLSSNIISEIKTSSFPRMQLKYLNLSNNRITTLEAGCFDNLSSSLLVVKLNRNRMSMIPPK IFKLPHLQFLELKRNRIKIVEGLTFQGLDSLRSLKMQRNGISKLKDGAFFGLNNMEELELEHNNLTRVNK GWLYGLRMLQQLYVSQNAIERISPDAWEFCQRLSELDLSYNQLTRLDESAFVGLSLLERLNLGDNRVTHI ADGVFRFLSNLQTLDLRNNEISWAIEDASEAFAGLTSLTKLILQGNQIKSITKKAFIGLESLEHLDLNNN AIMSIQENAFSQTHLKELILNTSSLLCDCHLKWLLQWLVDNNFQHSVNVSCAHPEWLAGQSILNVDLKDF VCDDFLKPQIRTHPETIIALRGMNVTLTCTAVSSSDSPMSTVWRKDSEILYDVDTENFVRYWQQAGEALE YTSILHLFNVNFTDEGKYQCIVTNHFGSNYSQKAKLTVNEMPSFLKTPMDLTIRTGAMARLECAAEGHPA PQISWQKDGGTDFPAARERRMHVMPEDDVFFIANVKIEDMGIYSCMAQNTAGGLSANASLTVLETPSFIR PLEDKTVTRGETAVLQCIAGGSPAPRLNWTKDDGPLLVTERHFFAAANQLLIIVDAGLEDAGKYTCIMSN TLGTERGHIYLNVISSPNCDSSQSSIGHEDDGWTTVGIVIIVVVCCVVGTSLIWVIVIYHMRRKNEDYSI TNTEELNLPADIPSYLSSQGTLSEPQEGYSNSEAGSHQQLMPPANGYIHKGTDGGTGTRVICSDCYDNAN IYSRTREYCPYTYIAEEDVLDQTLSSLMVQMPKETYLVHPPQDTTALESLIPSANREPSAFPTNHERISE KKLPSTQMSGETLQRPVWNINRELGLPHPPFSQQPVHESPQLHQNEGLAGREPDCSASSMSCHRLQDHAF DFSRTRNIQDGSEGT
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