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Report for CCDS30899.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30899.1 Public Homo sapiens 1 OR6Y1 24 110 108 CCDS HistoryNCBI Gene:391112Re-query CCDS DB by CCDS ID:30899.1Re-query CCDS DB by GeneID:391112See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 30899.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000641622.1 ENSP00000492894.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000641622.1Link to Ensembl Protein Viewer:ENSP00000492894.1Re-query CCDS DB by Nucleotide ID:ENST00000641622Re-query CCDS DB by Protein ID:ENSP00000492894
Original member Current member EBI ENST00000641282.1 ENSP00000493253.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000641282.1Link to Ensembl Protein Viewer:ENSP00000493253.1Re-query CCDS DB by Nucleotide ID:ENST00000641282Re-query CCDS DB by Protein ID:ENSP00000493253
Original member Current member NCBI NM_001005189.2 NP_001005189.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001005189.2Link to Protein Sequence:NP_001005189.1Re-query CCDS DB by Nucleotide ID:NM_001005189Re-query CCDS DB by Protein ID:NP_001005189Link to BLAST:NP_001005189.1
Original member Current member NCBI NM_001386050.1 NP_001372979.1 Accepted alive Link to Nucleotide Sequence:NM_001386050.1Link to Protein Sequence:NP_001372979.1Re-query CCDS DB by Nucleotide ID:NM_001386050Re-query CCDS DB by Protein ID:NP_001372979Link to BLAST:NP_001372979.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005189.1 325 Q8NGX8 325 100% 0 0
NP_001372979.1 325 Q8NGX8 325 100% 0 0

Chromosomal Locations for CCDS 30899.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 158547128 158548105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGACCACCATAATTCTGGAAGTAGATAATCATACAGTGACAACACGTTTCATTCTTCTGGGGTTTCCAA
CACGACCAGCCTTCCAGCTTCTCTTTTTCTCCATTTTCCTGGCAACCTATCTGCTGACACTGCTGGAGAA
TCTTCTTATCATCTTAGCTATCCACAGTGATGGGCAGCTGCATAAGCCCATGTACTTCTTCTTGAGCCAC
CTCTCCTTCCTGGAGATGTGGTATGTCACAGTCATCAGCCCCAAGATGCTTGTTGACTTCCTCAGTCATG
ACAAGAGTATTTCCTTCAATGGCTGCATGACTCAACTTTACTTTTTTGTGACCTTTGTCTGCACTGAGTA
CATCCTTCTTGCTATCATGGCCTTTGACCGCTATGTAGCCATTTGTAATCCACTACGCTACCCAGTCATC
ATGACCAACCAGCTCTGTGGCACACTGGCTGGAGGATGCTGGTTCTGTGGACTCATGACTGCCATGATTA
AGATGGTTTTTATAGCACAACTTCACTACTGTGGCATGCCTCAGATCAATCACTACTTTTGTGATATCTC
TCCACTCCTTAACGTCTCCTGTGAGGATGCCTCACAGGCTGAGATGGTGGACTTCTTCTTGGCCCTCATG
GTCATTGCTATTCCTCTTTGTGTTGTGGTGGCATCCTACGCTGCTATCCTTGCCACCATCCTCAGGATCC
CTTCTGCTCAGGGCCGCCAAAAGGCATTCTCCACCTGTGCCTCCCACCTGACCGTCGTAATTCTCTTCTA
TTCCATGACACTTTTCACCTATGCCCGTCCCAAACTCATGTATGCCTACAATTCCAACAAAGTGGTATCT
GTTCTCTACACTGTCATTGTTCCACTCCTCAACCCCATCATTTACTGTCTGAGGAACCATGAAGTAAAGG
CAGCCCTCAGAAAGACCATACATTGCAGAGGAAGTGGGCCCCAGGGAAATGGGGCTTTCAGTAGTTAA

Translation (325 aa):
MTTIILEVDNHTVTTRFILLGFPTRPAFQLLFFSIFLATYLLTLLENLLIILAIHSDGQLHKPMYFFLSH
LSFLEMWYVTVISPKMLVDFLSHDKSISFNGCMTQLYFFVTFVCTEYILLAIMAFDRYVAICNPLRYPVI
MTNQLCGTLAGGCWFCGLMTAMIKMVFIAQLHYCGMPQINHYFCDISPLLNVSCEDASQAEMVDFFLALM
VIAIPLCVVVASYAAILATILRIPSAQGRQKAFSTCASHLTVVILFYSMTLFTYARPKLMYAYNSNKVVS
VLYTVIVPLLNPIIYCLRNHEVKAALRKTIHCRGSGPQGNGAFSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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