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Report for CCDS31018.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31018.1 Public Homo sapiens 1 LPGAT1 24 110 108 CCDS HistoryNCBI Gene:9926Re-query CCDS DB by CCDS ID:31018.1Re-query CCDS DB by GeneID:9926See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31018.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366996.1 ENSP00000355963.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000366996.1Link to Ensembl Protein Viewer:ENSP00000355963.1Re-query CCDS DB by Nucleotide ID:ENST00000366996Re-query CCDS DB by Protein ID:ENSP00000355963
Original member Current member EBI ENST00000366997.9 ENSP00000355964.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000366997.9Link to Ensembl Protein Viewer:ENSP00000355964.4Re-query CCDS DB by Nucleotide ID:ENST00000366997Re-query CCDS DB by Protein ID:ENSP00000355964
Original member Current member NCBI NM_001320808.2 NP_001307737.1 Accepted alive Link to Nucleotide Sequence:NM_001320808.2Link to Protein Sequence:NP_001307737.1Re-query CCDS DB by Nucleotide ID:NM_001320808Re-query CCDS DB by Protein ID:NP_001307737Link to BLAST:NP_001307737.1
Original member Current member NCBI NM_001375841.1 NP_001362770.1 Accepted alive Link to Nucleotide Sequence:NM_001375841.1Link to Protein Sequence:NP_001362770.1Re-query CCDS DB by Nucleotide ID:NM_001375841Re-query CCDS DB by Protein ID:NP_001362770Link to BLAST:NP_001362770.1
Original member Current member NCBI NM_001375842.1 NP_001362771.1 Accepted alive Link to Nucleotide Sequence:NM_001375842.1Link to Protein Sequence:NP_001362771.1Re-query CCDS DB by Nucleotide ID:NM_001375842Re-query CCDS DB by Protein ID:NP_001362771Link to BLAST:NP_001362771.1
Original member Current member NCBI NM_014873.3 NP_055688.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014873.3Link to Protein Sequence:NP_055688.1Re-query CCDS DB by Nucleotide ID:NM_014873Re-query CCDS DB by Protein ID:NP_055688Link to BLAST:NP_055688.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001307737.1 370 Q92604 370 100% 0 0
NP_001362770.1 370 Q92604 370 100% 0 0
NP_001362771.1 370 Q92604 370 100% 0 0
NP_055688.1 370 Q92604 370 100% 0 0

Chromosomal Locations for CCDS 31018.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 211749899 211750050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 211750961 211751067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 211778918 211779044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 211783229 211783502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 211787632 211787727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 211793072 211793190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 211829059 211829296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1113 nt):
ATGGCTATAACTTTGGAAGAAGCTCCGTGGCTGGGCTGGCTCTTGGTGAAAGCACTGATGAGGTTTGCCT
TCATGGTCGTCAACAACCTGGTTGCTATTCCATCCTACATCTGCTATGTAATTATACTTCAGCCCCTTCG
AGTGCTGGACAGTAAGCGGTTCTGGTATATCGAAGGAATCATGTATAAATGGCTTTTAGGAATGGTAGCT
TCCTGGGGATGGTATGCTGGATATACAGTGATGGAATGGGGAGAAGATATTAAAGCAGTTTCAAAAGATG
AAGCAGTGATGTTGGTGAATCATCAGGCAACAGGAGATGTGTGCACACTGATGATGTGCCTCCAGGACAA
AGGACTGGTTGTTGCTCAGATGATGTGGTTGATGGATCATATTTTTAAGTACACAAACTTTGGAATTGTT
TCTCTAGTTCATGGAGACTTCTTTATAAGACAGGGAAGATCTTATCGTGACCAACAGCTGCTGCTTCTCA
AGAAGCACTTAGAAAATAATTACAGGAGCAGAGATCGAAAATGGATTGTTTTGTTTCCAGAAGGGGGCTT
CCTCAGGAAGAGGCGAGAAACAAGTCAGGCATTTGCCAAGAAAAATAACTTGCCATTTCTTACAAATGTT
ACTCTGCCAAGGTCTGGGGCAACAAAAATTATTTTGAATGCACTTGTAGCACAACAGAAAAATGGAAGTC
CAGCAGGAGGAGATGCTAAAGAATTAGACAGCAAATCAAAAGGCCTCCAGTGGATAATAGATACAACGAT
AGCTTATCCCAAAGCTGAACCTATAGATATTCAAACCTGGATCCTTGGATACAGGAAACCAACAGTCACA
CATGTACATTACAGGATCTTTCCAATTAAAGATGTACCCCTGGAGACTGATGACCTTACCACTTGGCTCT
ATCAGCGGTTTGTTGAAAAAGAAGACCTCTTATCACATTTTTATGAAACAGGAGCTTTTCCACCTTCCAA
GGGCCATAAGGAAGCTGTTTCCAGGGAGATGACCCTCAGCAACTTGTGGATATTTCTCATACAGTCTTTT
GCATTTTTGTCAGGCTATATGTGGTACAACATCATTCAGTATTTTTACCATTGCCTGTTTTAG

Translation (370 aa):
MAITLEEAPWLGWLLVKALMRFAFMVVNNLVAIPSYICYVIILQPLRVLDSKRFWYIEGIMYKWLLGMVA
SWGWYAGYTVMEWGEDIKAVSKDEAVMLVNHQATGDVCTLMMCLQDKGLVVAQMMWLMDHIFKYTNFGIV
SLVHGDFFIRQGRSYRDQQLLLLKKHLENNYRSRDRKWIVLFPEGGFLRKRRETSQAFAKKNNLPFLTNV
TLPRSGATKIILNALVAQQKNGSPAGGDAKELDSKSKGLQWIIDTTIAYPKAEPIDIQTWILGYRKPTVT
HVHYRIFPIKDVPLETDDLTTWLYQRFVEKEDLLSHFYETGAFPPSKGHKEAVSREMTLSNLWIFLIQSF
AFLSGYMWYNIIQYFYHCLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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