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Report for CCDS31022.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31022.1 Public Homo sapiens 1 SMYD2 24 110 108 CCDS HistoryNCBI Gene:56950Re-query CCDS DB by CCDS ID:31022.1Re-query CCDS DB by GeneID:56950See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31022.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366957.10 ENSP00000355924.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000366957.10Link to Ensembl Protein Viewer:ENSP00000355924.5Re-query CCDS DB by Nucleotide ID:ENST00000366957Re-query CCDS DB by Protein ID:ENSP00000355924
Original member Current member NCBI NM_020197.3 NP_064582.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020197.3Link to Protein Sequence:NP_064582.2Re-query CCDS DB by Nucleotide ID:NM_020197Re-query CCDS DB by Protein ID:NP_064582Link to BLAST:NP_064582.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064582.2 433 Q9NRG4-1 433 100% 0 0

Chromosomal Locations for CCDS 31022.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 214281255 214281427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 214305187 214305250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 214314762 214314872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 214318079 214318139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 214318859 214318983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 214324641 214324708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 214327622 214327724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 214330168 214330278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 214330950 214331070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 214332018 214332192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 214334200 214334308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 214336704 214336784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1302 nt):
ATGAGGGCCGAGGGCCTCGGCGGCCTGGAGCGCTTCTGCAGCCCGGGCAAAGGCCGGGGGCTGCGGGCTC
TGCAGCCCTTCCAGGTGGGGGACTTGCTGTTCTCCTGCCCGGCCTATGCCTACGTGCTCACGGTCAACGA
GCGGGGCAACCACTGCGAGTACTGCTTCACCAGGAAAGAAGGATTGTCCAAATGTGGAAGATGCAAGCAG
GCATTTTACTGCAATGTGGAGTGTCAGAAAGAAGATTGGCCCATGCACAAGCTGGAATGTTCTCCCATGG
TTGTTTTTGGGGAAAACTGGAATCCCTCGGAGACTGTAAGACTAACAGCAAGGATTCTGGCCAAACAGAA
AATCCACCCAGAGAGAACACCTTCGGAAAAATTGTTAGCTGTGAAGGAGTTTGAATCACATCTGGATAAG
TTAGACAATGAGAAGAAGGATTTGATTCAGAGTGACATAGCTGCTCTCCATCACTTTTACTCCAAGCATC
TCGGATTCCCTGACAATGATAGCCTCGTAGTACTCTTTGCACAGGTTAACTGTAATGGCTTCACAATTGA
AGATGAAGAACTTTCTCATTTGGGATCAGCGATATTTCCTGATGTTGCATTGATGAATCATAGCTGTTGC
CCCAATGTCATTGTGACCTACAAAGGGACCCTGGCAGAAGTCAGAGCTGTACAGGAAATCAAGCCGGGAG
AGGAGGTTTTTACCAGCTATATTGATCTCCTGTACCCAACGGAAGATAGAAATGACCGGTTAAGAGATTC
TTATTTCTTTACCTGTGAGTGCCAGGAGTGTACCACCAAGGACAAGGATAAGGCCAAGGTGGAAATCCGG
AAGCTCAGCGATCCCCCAAAGGCAGAAGCCATCCGAGACATGGTCAGATATGCACGCAACGTCATTGAAG
AGTTCCGGAGGGCCAAGCACTATAAATCCCCTAGTGAGCTGCTGGAGATCTGCGAGCTCAGCCAGGAGAA
GATGAGCTCTGTGTTTGAGGACAGTAACGTGTACATGTTGCACATGATGTACCAGGCCATGGGTGTCTGC
TTGTACATGCAGGACTGGGAAGGAGCCCTGCAATATGGACAGAAAATCATTAAGCCCTACAGTAAGCACT
ATCCTTTGTACTCCCTCAACGTGGCCTCCATGTGGTTGAAGCTAGGGAGACTCTACATGGGCCTGGAACA
CAAAGCCGCAGGGGAGAAAGCCCTGAAGAAGGCCATTGCAATCATGGAAGTAGCTCACGGCAAAGATCAT
CCATATATTTCTGAGATCAAACAGGAAATTGAAAGCCACTGA

Translation (433 aa):
MRAEGLGGLERFCSPGKGRGLRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRCKQ
AFYCNVECQKEDWPMHKLECSPMVVFGENWNPSETVRLTARILAKQKIHPERTPSEKLLAVKEFESHLDK
LDNEKKDLIQSDIAALHHFYSKHLGFPDNDSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCC
PNVIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTCECQECTTKDKDKAKVEIR
KLSDPPKAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVC
LYMQDWEGALQYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIMEVAHGKDH
PYISEIKQEIESH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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