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Report for CCDS3103.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3103.1 Public Homo sapiens 3 FAIM 24 110 108 CCDS HistoryNCBI Gene:55179Re-query CCDS DB by CCDS ID:3103.1Re-query CCDS DB by GeneID:55179See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3103.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393034.6 ENSP00000376754.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393034.6Link to Ensembl Protein Viewer:ENSP00000376754.2Re-query CCDS DB by Nucleotide ID:ENST00000393034Re-query CCDS DB by Protein ID:ENSP00000376754
Original member Current member EBI ENST00000393035.6 ENSP00000376755.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393035.6Link to Ensembl Protein Viewer:ENSP00000376755.2Re-query CCDS DB by Nucleotide ID:ENST00000393035Re-query CCDS DB by Protein ID:ENSP00000376755
Original member Current member EBI ENST00000464668.5 ENSP00000417642.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000464668.5Link to Ensembl Protein Viewer:ENSP00000417642.1Re-query CCDS DB by Nucleotide ID:ENST00000464668Re-query CCDS DB by Protein ID:ENSP00000417642
Original member Current member NCBI NM_001033032.2 NP_001028204.1 Accepted alive Link to Nucleotide Sequence:NM_001033032.2Link to Protein Sequence:NP_001028204.1Re-query CCDS DB by Nucleotide ID:NM_001033032Re-query CCDS DB by Protein ID:NP_001028204Link to BLAST:NP_001028204.1
Original member Current member NCBI NM_018147.4 NP_060617.1 Accepted alive Link to Nucleotide Sequence:NM_018147.4Link to Protein Sequence:NP_060617.1Re-query CCDS DB by Nucleotide ID:NM_018147Re-query CCDS DB by Protein ID:NP_060617Link to BLAST:NP_060617.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028204.1 179 Q9NVQ4-1 179 100% 0 0
NP_060617.1 179 Q9NVQ4-1 179 100% 0 0

Chromosomal Locations for CCDS 3103.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 138621429 138621539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138622188 138622416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138629107 138629156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138632930 138633079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (540 nt):
ATGACAGATCTCGTAGCTGTTTGGGATGTTGCTTTAAGTGACGGAGTCCACAAGATCGAATTTGAACATG
GGACTACATCAGGCAAACGAGTAGTATATGTAGATGGAAAGGAAGAGATAAGAAAAGAGTGGATGTTCAA
ATTAGTGGGCAAAGAAACATTCTATGTTGGAGCTGCAAAGACAAAAGCGACCATAAATATAGACGCTATC
AGTGGTTTTGCTTATGAATATACTCTGGAAATTAATGGGAAAAGTCTCAAGAAGTATATGGAGGACAGAT
CAAAAACCACCAATACTTGGGTATTACACATGGATGGTGAGAACTTTAGAATTGTTTTGGAAAAAGATGC
TATGGACGTATGGTGCAATGGTAAAAAATTGGAGACAGCGGGTGAGTTTGTAGATGATGGGACTGAAACT
CACTTCAGTATCGGGAACCATGACTGTTACATAAAGGCTGTCAGTAGTGGGAAGCGGAAAGAAGGGATTA
TTCATACTCTCATTGTGGATAATAGAGAAATCCCAGAGATTGCAAGTTAA

Translation (179 aa):
MTDLVAVWDVALSDGVHKIEFEHGTTSGKRVVYVDGKEEIRKEWMFKLVGKETFYVGAAKTKATINIDAI
SGFAYEYTLEINGKSLKKYMEDRSKTTNTWVLHMDGENFRIVLEKDAMDVWCNGKKLETAGEFVDDGTET
HFSIGNHDCYIKAVSSGKRKEGIIHTLIVDNREIPEIAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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