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Report for CCDS3115.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3115.1 Public Homo sapiens 3 SPSB4 24 110 108 CCDS HistoryNCBI Gene:92369Re-query CCDS DB by CCDS ID:3115.1Re-query CCDS DB by GeneID:92369See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3115.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000310546.3 ENSP00000311609.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000310546.3Link to Ensembl Protein Viewer:ENSP00000311609.2Re-query CCDS DB by Nucleotide ID:ENST00000310546Re-query CCDS DB by Protein ID:ENSP00000311609
Original member Current member NCBI NM_080862.3 NP_543138.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080862.3Link to Protein Sequence:NP_543138.1Re-query CCDS DB by Nucleotide ID:NM_080862Re-query CCDS DB by Protein ID:NP_543138Link to BLAST:NP_543138.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_543138.1 273 Q96A44 273 100% 0 0

Chromosomal Locations for CCDS 3115.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 141066105 141066798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141147142 141147269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (822 nt):
ATGGGCCAGAAGCTCTCGGGGAGCCTCAAGTCAGTGGAGGTGCGAGAGCCGGCGCTGCGGCCGGCCAAGC
GGGAGCTGCGGGGTGCAGAGCCCGGGCGGCCGGCGCGGCTGGACCAGCTGTTGGACATGCCAGCGGCGGG
GCTGGCTGTGCAGCTGCGGCACGCGTGGAACCCCGAGGACCGCTCGCTCAACGTCTTCGTCAAGGACGAC
GACCGGCTCACCTTCCACCGGCACCCCGTGGCCCAGAGCACCGACGGCATCCGCGGCAAGGTGGGCCACG
CCCGCGGCCTGCACGCCTGGCAGATCAACTGGCCGGCTCGGCAGCGCGGCACCCACGCTGTAGTTGGTGT
GGCCACGGCCCGTGCTCCCCTGCACTCCGTGGGCTACACGGCGCTGGTAGGCAGTGACGCCGAGTCGTGG
GGCTGGGACCTGGGCCGCAGCCGCCTCTACCACGACGGCAAGAACCAGCCCGGCGTGGCCTACCCGGCCT
TTCTGGGGCCCGACGAGGCCTTTGCGCTGCCCGACTCGCTGCTCGTGGTGCTGGACATGGATGAGGGCAC
ACTCAGCTTCATCGTGGATGGCCAGTACCTGGGCGTGGCCTTCCGAGGTCTCAAGGGCAAGAAGCTGTAC
CCGGTGGTGAGTGCCGTGTGGGGCCACTGTGAAGTCACCATGCGCTACATCAACGGCCTTGACCCCGAGC
CCCTGCCACTGATGGACCTGTGCCGGAGATCCATCCGCTCGGCCCTGGGCCGCCAGCGCCTGCAGGACAT
CAGCTCCCTGCCCCTGCCTCAGTCTCTCAAAAACTATCTGCAGTACCAGTGA

Translation (273 aa):
MGQKLSGSLKSVEVREPALRPAKRELRGAEPGRPARLDQLLDMPAAGLAVQLRHAWNPEDRSLNVFVKDD
DRLTFHRHPVAQSTDGIRGKVGHARGLHAWQINWPARQRGTHAVVGVATARAPLHSVGYTALVGSDAESW
GWDLGRSRLYHDGKNQPGVAYPAFLGPDEAFALPDSLLVVLDMDEGTLSFIVDGQYLGVAFRGLKGKKLY
PVVSAVWGHCEVTMRYINGLDPEPLPLMDLCRRSIRSALGRQRLQDISSLPLPQSLKNYLQYQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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