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Report for CCDS31207.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31207.1 Public Homo sapiens 10 FAM13C 24 110 108 CCDS HistoryNCBI Gene:220965Re-query CCDS DB by CCDS ID:31207.1Re-query CCDS DB by GeneID:220965See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 31207.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000611933.4 ENSP00000481830.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000611933.4Link to Ensembl Protein Viewer:ENSP00000481830.1Re-query CCDS DB by Nucleotide ID:ENST00000611933Re-query CCDS DB by Protein ID:ENSP00000481830
Original member Current member NCBI NM_001001971.3 NP_001001971.1 Accepted alive Link to Nucleotide Sequence:NM_001001971.3Link to Protein Sequence:NP_001001971.1Re-query CCDS DB by Nucleotide ID:NM_001001971Re-query CCDS DB by Protein ID:NP_001001971Link to BLAST:NP_001001971.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001971.1 487 Q8NE31-3 487 100% 0 0

Chromosomal Locations for CCDS 31207.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 59247614 59247737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59251575 59251676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59252799 59252998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59254348 59254443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59268553 59268691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59269899 59270109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59283363 59283447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59302801 59302864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59323988 59324106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59352270 59352474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59355887 59355943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59362399 59362460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1464 nt):
ATGTTTTCTTGTTTCTGTTTCAGCCTTCAGGATAATTCCTTCAGCAGCACCACTGTAACAGAGTGTGACG
AAGATCCAGTCTCTCTACATGAAGACCAGACTGATTGCTCCAGTCTCAGAGATGAAAACAATAAAGAGAA
CTACCCCGACGCAGGGGCTCTGGTAGAAGAGCACGCGCCGCCCTCTTGGGAGCCGCAGCAGCAGAATGTA
GAGGCGACCGTGCTGGTGGACAGCGTATTGCGACCCAGCATGGGCAACTTCAAGTCCAGGAAGCCCAAGT
CCATCTTCAAAGCGGAGAGCGGGAGGAGCCACGGAGAAAGTCAGGAGACAGAGCATGTGGTATCCAGCCA
GTCAGAGTGTCAGGTGAGAGCAGGAACACCAGCTCATGAGAGTCCACAAAACAATGCCTTCAAGTGCCAA
GAAACAGTGCGACTTCAACCAAGAATAGACCAGAGGACTGCCATTTCGCCAAAGGATGCTTTTGAAACTC
GGCAGGACTTAAATGAGGAAGAAGCTGCTCAGGTGCATGGAGTCAAGGACCCGGCGCCAGCATCAACCCA
GAGCGTGCTTGCCGATGGGACAGATTCTGCAGACCCCTCACCAGTCCACAAAGATGGGCAGAATGAGGCC
GACAGTGCACCAGAAGACCTCCACTCTGTGGGGACCAGCAGGCTGCTCTATCACATCACTGATGGTGATA
ACCCACTGCTGTCGCCACGATGCTCCATCTTCAGCCAAAGCCAGAGATTCAACTTAGACCCCGAGTCAGC
CCCATCTCCACCCAGCACTCAGCAGTTTATGATGCCGCGGAGTTCTTCACGCTGCAGCTGTGGAGATGGC
AAGGAGCCACAGACCATCACCCAGCTCACCAAGCACATCCAGAGCCTCAAGCGGAAAATTCGGAAATTTG
AAGAAAAATTTGAACAAGAAAAGAAATACCGGGTAACTAAGCAAGACAAGAACCTCATAAAGCCGCTTTA
TGACCGATACAGAATTATCAAGCAAATCTTGTCAACACCTTCCCTTATTCCAACAATTCAGGAGGAAGAG
GACTCTGATGAAGACCGTCCACAGGGAAGCCAACAACCTTCTTTGGCAGATCCAGCATCTCACCTTCCTG
TTGGTGACCACCTCACCTACTCTAATGAGACTGAGCCTGTTAGGGCCCTTTTACCAGATGAAAAGAAAGA
AGTAAAACCACCAGCTCTCTCCATGTCTAATTTACATGAGGCTACCATGCCTGTACTTCTTGACCATCTC
CGAGAAACTAGGGCTGACAAGAAGAGACTGCGGAAAGCCTTAAGAGAATTTGAAGAACAGTTTTTTAAAC
AAACAGGAAGAAGTCCACAAAAGGAAGATAGGATACCAATGGCAGATGAGTATTATGAATATAAGCACAT
AAAAGCCAAACTGAGACTATTAGAGGTCCTCATCAGCAAGCAAGATGTGGCCAAAACTATTTGA

Translation (487 aa):
MFSCFCFSLQDNSFSSTTVTECDEDPVSLHEDQTDCSSLRDENNKENYPDAGALVEEHAPPSWEPQQQNV
EATVLVDSVLRPSMGNFKSRKPKSIFKAESGRSHGESQETEHVVSSQSECQVRAGTPAHESPQNNAFKCQ
ETVRLQPRIDQRTAISPKDAFETRQDLNEEEAAQVHGVKDPAPASTQSVLADGTDSADPSPVHKDGQNEA
DSAPEDLHSVGTSRLLYHITDGDNPLLSPRCSIFSQSQRFNLDPESAPSPPSTQQFMMPRSSSRCSCGDG
KEPQTITQLTKHIQSLKRKIRKFEEKFEQEKKYRVTKQDKNLIKPLYDRYRIIKQILSTPSLIPTIQEEE
DSDEDRPQGSQQPSLADPASHLPVGDHLTYSNETEPVRALLPDEKKEVKPPALSMSNLHEATMPVLLDHL
RETRADKKRLRKALREFEEQFFKQTGRSPQKEDRIPMADEYYEYKHIKAKLRLLEVLISKQDVAKTI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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